Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq41 93.3 4e-14 >seq41 Length=297594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 222/333 (67%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 || || || || ||||||| ||||| ||||| ||||| || |||| || || ||| Sbjct 63445 AAGGTCAAACCGGGCATCAGGCCTCGCTTTTTCAACCAGAAAATTGACGCGAAGCTGCCG 63504 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| || || ||||| || || ||||| | || ||||| ||||| || || Sbjct 63505 GAAAAGAAAATACCTTCAACAGCTGCGAACGCGACCAAACGTTCGGAAAACGGTGATTGG 63564 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 || ||||| |||||| || | |||||| || | | | ||||||||| Sbjct 63565 CGGTCACCGATCCAACGCAAAGCCCAATCTGCTTTTTTCTTCACACACGGAATTGTTTCA 63624 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 || || || || | | | || ||| | | ||||| || ||||| | ||| Sbjct 63625 ATTGCGTTGAACAGAAAATCACGCTCCACCGGATCACGGATGTAGGTGTCAATCAACAAG 63684 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 || ||||| || || || | ||||| ||||| || || || ||||| ||| | | ||| Sbjct 63685 CTGTACATCTCGGAATGGACATTTTCTATAGCAATTTGGAAGCCATAGAAGAAACGTGCT 63744 Query 14223 TCCGACCATTGTACTTC-CGAGTAAAATCTTTC 14254 || | | ||| | ||| ||| |||||| ||| Sbjct 63745 TCGGTCACTTGAATTTCTTGAG-AAAATCGTTC 63776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479663002852600