Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq53 116 5e-21 >seq53 Length=248793 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||||||||| || ||||| ||||| |||| ||||| |||||||| ||| | ||| Sbjct 131854 ATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTT 131913 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | |||| | || || || ||||||||||||| |||||| ||| || || || ||||| Sbjct 131914 AGCATAGTTGGGCTCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCC 131973 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005 ||| || |||||||| | ||||| ||||| | ||||||||||| Sbjct 131974 CCTTTCGGCAGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 132020 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||||||||||||||| || | || | |||||| || | ||| || |||| ||| || Sbjct 132230 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 132289 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| ||||| || ||||||||||| || || |||||||||||||| ||||||| ||| | Sbjct 132290 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 132349 Query 71262 ACTATTTCTAAGACCAT 71278 ||||| ||||||| Sbjct 132350 CGAATTTCGCAGACCAT 132366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671048269027640