Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq104 96.9 4e-15 seq389 86.0 6e-12 seq53 86.0 6e-12 seq51 86.0 6e-12 seq41 82.4 8e-11 >seq104 Length=152162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| |||||||||| ||||||||||| || || || ||||| || |||||| Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||||| | ||| | ||||| | |||||| ||||| | ||| | || || || || Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 5089 AGAGTTTTCACAAATATCTGCAT 5111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | |||| |||||||||||| || || || |||||||| || |||||| Sbjct 4001 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 4060 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | ||||| | |||||| ||||| | ||| | || |||||||| | Sbjct 4061 CTTTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGA 4120 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 4121 GGGTCTTAACGAAAATTTGCAT 4142 >seq389 Length=4972 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | |||| |||||||||||| || || || |||||||| || ||||| Sbjct 4192 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 4251 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | ||| | ||||| | ||||| ||||| | ||| | || ||||| || | Sbjct 4252 CTTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 4311 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 4312 GGGTCTTAACGAAAATTTGCAT 4333 >seq53 Length=248793 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 156182 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 156241 ||||||||||| || ||||| || || | |||||| ||||| | |||| ||||| || | Sbjct 131852 AAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAAT 131911 Query 156242 TTAGGCAAAGTAGGG-TTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGC 156300 ||| ||| ||| ||| | || |||| | || ||||| || ||| || ||||| || Sbjct 131912 TTA-GCATAGTTGGGCTCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGC 131970 Query 156301 TCCCCTGTCTGCTGCCATTTCAAT 156324 |||||| || || ||||| || || Sbjct 131971 TCCCCTTTCGGCAGCCATGTCTAT 131994 >seq51 Length=255661 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | |||| |||||||||||| || || || |||||||| || ||||| Sbjct 781 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 722 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | ||| | ||||| | ||||| ||||| | ||| | || ||||| || | Sbjct 721 CTTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 662 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 661 GGGTCTTAACGAAAATTTGCAT 640 >seq41 Length=297594 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 50411 CCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAG 50470 |||||||||| || ||||| || ||||||||| | || |||||||| ||||| || Sbjct 63550 CCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGT 63491 Query 50471 CCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGA 50530 | || || | | |||| |||| | |||||||| | || || ||||||||||||| Sbjct 63490 CAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGA 63431 Query 50531 TTTCGCGCGACGA 50543 | || || ||||| Sbjct 63430 TCTCTCGTGACGA 63418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506945705886480