Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq53 96.9 5e-15 >seq53 Length=248793 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAA-- 96963 || || || ||||||||||||||||| ||| | ||||| ||| | || ||| |||| Sbjct 133501 GCGGTTTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGAC--GCGAAAAAGA 133444 Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023 || | ||| | ||||| ||||||| || ||||||||||| || ||| | || ||| Sbjct 133443 ACACGGGCATCGAAGAAAACAGAGCCAGAGATTTGTTTTATGCCCTTTGGATACCTGATC 133384 Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083 | |||||||||||| | | | || || | ||| || |||||||| | | | Sbjct 133383 TATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCATGAATGTC 133324 Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | || || | |||| |||||||| |||||||| Sbjct 133323 CAGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 133290 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGC-TGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || ||||| ||| | | || | || | || || ||||||||||| || || Sbjct 132030 TACAAGACGGTTTGGGAAATTTCC-CAAAAATGCGTCATAGACATGGCTGCCGAAAGGGG 131972 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | | |||||||| || ||||| ||| | || |||| ||||||| ||| | Sbjct 131971 AGCTTTTATTGACCAATCCCAGTCGTTGAATATTCACATTGCTGAGCCCAACTATGCTAA 131912 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 |||| ||||| || || |||| ||||| | || || || || || ||||||||| | Sbjct 131911 ATTGACGTCGATGCATTTCTACGGCTGGAAGAGAGGTCTGAAAACTGGGATGTACTATTT 131852 Query 98219 GAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 |||||| ||| |||| | || || | ||| || |||||| Sbjct 131851 GAGAACCAAGCCGGCAGTGACGGCTATTCAATTCACCGTGGAC 131809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740958795741640