Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq22 107 2e-18 >seq22 Length=390722 Score = 107 bits (118), Expect = 2e-18 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||||||| |||| || | |||||| | ||| ||| | ||||| Sbjct 92456 GCCAGTGGAACCGAATCCGGCTGCTCCACGTTCCGTGTTGTCAAGGTGAGAT---TCTTC 92512 Query 5563 CACATCG---GGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 ||| | || || || || || || ||||| || || ||||| || || ||| | Sbjct 92513 GACAATGTTCGGTAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 92571 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || | |||||| | || ||| || ||||| | | || || || ||||| | ||| | Sbjct 92572 TCACGTGGAAATCTTGGTCGCCAAAATTGAATACAATTACTCCAACATTGCCCCTGTAAT 92631 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | ||||||| |||||||||||| | |||||| |||||| | |||| ||| || || | Sbjct 92632 CTGCGTCTACCACGCCCGCGCCGATGTCGATTCCGTGCTTCAAAGCCAAGCCAGATCGAG 92691 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | || | || || ||||| || | |||| Sbjct 92692 GTGCAATACGACCATAGCAGCCGACAGGAA 92721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429997589679368