Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7731 111 1e-19 seq104 96.9 3e-15 seq389 82.4 7e-11 seq51 82.4 7e-11 >seq7731 Length=250 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || ||| ||||||| | || ||||| ||||| || ||||| || || Sbjct 93 ATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTT 152 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | | | ||||||| | || || |||| ||||| Sbjct 153 GTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGAT 212 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || || |||||||||||||| Sbjct 213 GGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 248 >seq104 Length=152162 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||||||||||||||||||||| |||||||| ||||| || || | |||||| |||| Sbjct 21338 CAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTACTTTTGA 21397 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||||| | | || || || | || || ||||||||||||||||| | Sbjct 21398 CATTTTCAATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTAAGAGTCT 21457 Query 94992 TCACAAAGATCTGCAT 95007 |||| || |||||||| Sbjct 21458 TCACGAATATCTGCAT 21473 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||| |||||||||||||| || || | |||||| |||| | Sbjct 20332 CAAATATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTACCCTTCA 20391 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || |||| | || || || | ||||| ||||||||||| | |||| Sbjct 20392 CATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 20451 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 20452 TCACAAAAATCTGCAT 20467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||| |||||||| ||||| || || | |||||| |||| | Sbjct 20619 CAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTACCCTTCA 20678 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || |||| | || || || | ||||| ||||||||||| | |||| Sbjct 20679 CATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 20738 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 20739 TCACAAAAATCTGCAT 20754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||| |||||||| ||||| || || | |||||| |||| | Sbjct 20906 CAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTACCCTTCA 20965 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || |||| | || || || | ||||| ||||||||||| | |||| Sbjct 20966 CATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 21025 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 21026 TCACAAAAATCTGCAT 21041 >seq389 Length=4972 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || || | |||||||||||| ||||| || ||||| || | |||||| | || | Sbjct 4481 CAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCTTTCA 4540 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||||| | | || || || | ||||||||||| |||||||| |||| Sbjct 4541 CATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTT 4600 Query 94992 TCACAAAGATCTGCATGC 95009 | || || |||||||||| Sbjct 4601 TAACGAAAATCTGCATGC 4618 >seq51 Length=255661 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || || | |||||||||||| ||||| || ||||| || | |||||| | || | Sbjct 492 CAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCTTTCA 433 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||||| | | || || || | ||||||||||| |||||||| |||| Sbjct 432 CATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTT 373 Query 94992 TCACAAAGATCTGCATGC 95009 | || || |||||||||| Sbjct 372 TAACGAAAATCTGCATGC 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230462146040