Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq51 188 1e-43 seq5 156 7e-34 seq60 143 4e-30 seq44 138 2e-28 >seq51 Length=255661 Score = 188 bits (208), Expect = 1e-43 Identities = 205/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||| || |||||||| ||||||||||| ||||| || || Sbjct 169139 GCGAAGCGTCATCGCAAAGTTCTACGTGATAACATTCAAGGAATCACGAAGCCTGCGATT 169198 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| |||||||| || |||||| || || ||| | |||||||| | | Sbjct 169199 CGACGTTTGGCTCGCCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAACT 169258 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| |||||| | | ||| | | ||||||| | || ||| Sbjct 169259 CGAGCTGTGTTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTACTGCGAA 169318 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||| | || |||||||| ||||||| | || ||||| |||||| | |||||| Sbjct 169319 CACGCTAAAAGGAAAACTGTCACAGCCATGGACGTTGTTTATGCGTTGAAAAGACAAGGC 169378 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 || | |||||||| || || |||||| ||| Sbjct 169379 CGAACCATTTATGGATTCGGTGGTTAATTTTC 169410 Score = 141 bits (156), Expect = 1e-29 Identities = 199/278 (72%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || |||||||| || || ||||| || || || || Sbjct 237016 GCCAAACGTCATCGTAAGGTTTTGCGCGATAACATTCAGGGGATCACGAAACCGGCAATT 237075 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | ||||| ||||||||||| || || | ||| ||| | |||||||| | | Sbjct 237076 CGTCGATTAGCTCGCCGTGGTGGAGTGAAACGGATAAGTGGTTTGATTTATGAAGAAACT 237135 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| | | ||| | | |||||| | |||| || Sbjct 237136 CGAGCCGTGTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGTGAA 237195 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| |||||| | |||||| | |||||||| |||||| | |||||| Sbjct 237196 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGGC 237255 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | || ||||||||||| ||||| ||| | |||| Sbjct 237256 CGAACCATCTATGGTTTTGGTGGTTAA-CTTTTCATCA 237292 >seq5 Length=660114 Score = 156 bits (172), Expect = 7e-34 Identities = 194/262 (74%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||| | | | | | || ||||| || |||||||| || |||||||| || Sbjct 20876 GCTAAGCGTCATAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAGCCAGCAATT 20817 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||||||||||||||| |||||| | || || || | |||||||||| Sbjct 20816 CGGCGTTTGGCTCGTCGTGGTGGAGTAAAGCGTATTTCCGGCTTAATATATGAAGAGACG 20757 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 |||| |||||||| || | | | |||| | | |||||| | ||| ||| || Sbjct 20756 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGT-TACT-TACTGCG 20699 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || |||||||| ||||| || | |||||| | || ||||| | |||||||| | Sbjct 20698 AGCATGCGAAACGTAAAACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAGG 20639 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | ||||| || || || Sbjct 20638 GCCGAACTATTTACGGCTTCGG 20617 >seq60 Length=224785 Score = 143 bits (158), Expect = 4e-30 Identities = 201/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || |||||||| || || ||||| || || || || Sbjct 192598 GCCAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGGATCACGAAACCGGCAATT 192539 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 192538 CGTCGACTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 192479 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||||||| ||| ||||| | | ||| | | |||||| | |||| ||| Sbjct 192478 CGAGCCGTTTTGAA-ATCATTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGA 192420 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | ||||| |||||| | |||||| | |||||||| |||||| | ||||| Sbjct 192419 ACATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGG 192360 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 ||| | || |||||||| || ||||| ||| | ||| Sbjct 192359 CCGAACCATCTATGGTTTCGGTGGTTAA-CTTTTCATC 192323 >seq44 Length=286660 Score = 138 bits (152), Expect = 2e-28 Identities = 194/271 (72%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | || |||||||| ||||||||||| || ||||| || Sbjct 164158 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCAGCGATT 164099 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||||| || ||| ||| | |||||||| | | Sbjct 164098 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGTGGCTTGATTTATGAAGAAACT 164039 Query 16553 CGTGATGTTTTGAAGATCTTCCT---CAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 || | ||| ||||| ||| || || | |||| | |||||| || || Sbjct 164038 CGAGCTGTGTTGAAATCCTTTCTTGAAAATATCGTT---CGAGATGCTGTCACGTACTGT 163982 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || || || ||| | || || || || | |||||| | ||||||||||||||| | ||| Sbjct 163981 GAACATGCCAAAAGGAAAACCGTTACTGCGATGGATGTTGTCTATGCATTGAAAAGACAA 163922 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || || | |||||||||||||| |||||| Sbjct 163921 GGTCGAACCATTTATGGTTTTGGTGGTTAAT 163891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065289826427