Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq145 118 3e-21 seq53 93.3 1e-13 >seq145 Length=107730 Score = 118 bits (130), Expect = 3e-21 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 ||||||||| || |||||||| || | ||||| ||| | || |||||||| || || Sbjct 34564 TTTTCCACTGCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTTGAAGAACTGCTTTG 34623 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 ||| || | ||||| || ||||| || | ||| ||| || ||||| || || ||||| Sbjct 34624 GTTCATCAGTGGAAGCACGAATGCGAAACAGCTTTCAGAGAAGAATGTTAACATCTGGGA 34683 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGT-CGACAACGAAGAAGGT 111491 ||||||| || | || || | || |||| | | |||| | | | ||||||||| Sbjct 34684 TGGAAATTCTTCCAGAGAATTCTTGGA--CAGTAGAGGATTGTACAATTATGAAGAAGGT 34741 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 || | || || ||||| || |||||||||||||||||||| Sbjct 34742 GACTTGGGGCCTGTTTATGGTTTTCAATGGCGCCACTTTGG 34782 >seq53 Length=248793 Score = 93.3 bits (102), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||||||||| | ||| | || ||| || || || || ||||| |||||||| | | Sbjct 133510 GGGGCGTTTGCGGTTTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGA-CGC 133452 Query 363898 CGGAAA-AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| |||||||| | || ||| | || | ||| |||| ||||| |||||| | Sbjct 133451 GAAAAAGAACACGGGCATCGAAGAAAACAGAGCCAGAGATTTGTTTTATGCCCTTTGGAT 133392 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 |||| | || ||||||||| | || || | |||||||||| | ||||| || Sbjct 133391 ACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCA 133332 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 ||||||||||| | | ||| | ||||| || || | || ||||||||||||| Sbjct 133331 TGAATGTCCAGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATACGAAAAGTA 133272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303172597176098