Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq104 86.0 5e-12 seq308 82.4 7e-11 seq53 82.4 7e-11 >seq104 Length=152162 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || |||||| ||||||| | ||||| ||| ||| | Sbjct 4770 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAG-CCATC 4712 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || ||| |||||| |||||||||||||| ||||| ||||| Sbjct 4711 AGATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCA 4652 Query 24110 ACAGAGACTGATTT 24123 |||| | || |||| Sbjct 4651 ACAGCGGCTTATTT 4638 >seq308 Length=9352 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || |||||| ||||||| | ||||| ||| | Sbjct 968 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 909 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| |||||| |||||||||||||| ||||| |||||| Sbjct 908 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 849 Query 24111 CAGAGACTGATTT 24123 ||| | || |||| Sbjct 848 CAGCGGCTTATTT 836 >seq53 Length=248793 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 ||||||||||| ||||| || ||||| | | || ||| || ||||| || | || Sbjct 133276 TTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAG 133335 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 | ||||||| |||||| | | | | || | | |||||||| | |||| ||| Sbjct 133336 GGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCC 133395 Query 133128 ACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGT 133187 | | |||| |||| ||||| | || | | ||||| |||| | || |||| || Sbjct 133396 AAAGGGCATAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCCGTGTTCTTTTTCGCGT 133455 Query 133188 CCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC 133242 | | |||| ||| |||||||| |||||||| || | ||| || || || || || Sbjct 133456 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCC 133510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429879205320045