Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq288 127 1e-24 seq400 122 6e-23 seq399 122 6e-23 seq256 122 6e-23 seq839 111 1e-19 seq86 109 4e-19 seq308 91.5 1e-13 seq104 86.0 4e-12 >seq288 Length=13935 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 12066 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 12007 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 12006 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 11972 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 8892 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 8833 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 8832 GCCGGTATTTAGCCTTA 8816 >seq400 Length=4684 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 2616 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 2557 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 2556 TGATCCATTCATACGCGTCACTAATTAGATGACGA 2522 >seq399 Length=4684 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 2069 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 2128 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 2129 TGATCCATTCATACGCGTCACTAATTAGATGACGA 2163 >seq256 Length=33707 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 31092 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 31151 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 31152 TGATCCATTCATACGCGTCACTAATTAGATGACGA 31186 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| ||||||||||||||||||||||||||||||||| | ||||| || Sbjct 9630 AAGCCCGTTCTCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 9689 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||| ||||||||||| || ||||| Sbjct 9690 TGATCCATTCATACGCGTCACTAAATAAATGAC 9722 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 21184 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 21243 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||| ||| Sbjct 21244 ACGAATATTTAGTCTT 21259 >seq839 Length=1086 Score = 111 bits (122), Expect = 1e-19 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCT-TTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 429 CTCTCTCTACAGGGTTCTGTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 370 Query 20006 CGGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 369 TGGTCATATTTAGCCTTA 352 >seq86 Length=172892 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| ||||||||||||||||||||||||||| | ||||| || Sbjct 96862 AAGCCCGTTCCCTTGGTTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 96921 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | || | ||||| |||||||||||||||||||| Sbjct 96922 TGATGCATTCATACGCGTCACTAATTAGATGAC 96954 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| ||||||||||||||||||||||||||| | ||||| || Sbjct 167062 AAGCCCGTTCCCTTGGTTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 167121 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | || | ||||| |||||||||||||||||||| Sbjct 167122 TGATGCATTCATACGCGTCACTAATTAGATGAC 167154 >seq308 Length=9352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | |||| |||||||||||| ||| || Sbjct 829 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 888 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || || |||| | |||||| |||||||||| |||||| ||||| || ||||| Sbjct 889 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 948 Query 38298 GTTTTCACGAATATCTGCAT 38317 || ||||| ||||||||||| Sbjct 949 GTCTTCACAAATATCTGCAT 968 >seq104 Length=152162 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | |||| |||||||||||| ||| || Sbjct 4631 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 4690 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || || |||| | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 4691 TTTACGTTCTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 4750 Query 38298 GTTTTCACGAATATCTGCAT 38317 || ||||| ||||||||||| Sbjct 4751 GTCTTCACAAATATCTGCAT 4770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334902953370209