Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7731 91.5 1e-13 seq308 89.7 4e-13 seq74 89.7 4e-13 seq104 84.2 2e-11 seq3104 82.4 7e-11 seq1633 82.4 7e-11 >seq7731 Length=250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || |||||| ||| Sbjct 248 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCT 189 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || ||||| ||||| Sbjct 188 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 129 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||||||||| || | || |||| || || ||| || |||||| Sbjct 128 CAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAAT 69 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 68 ATCCAGAAGGAGTCTACCCTTCA 46 >seq308 Length=9352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 968 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 909 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| || || | || | ||| ||||||||||| || || || || | Sbjct 908 GATACAATTGAGA-ACGTAAAAAGTAAGATTCAA-GACAAAGAAGGCATCCCTCCAGATC 851 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 |||||||| |||||||||| || Sbjct 850 AACAGCGGCTTATTTTTGCTGG 829 >seq74 Length=189204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| ||||| || | |||||||| || ||||| | ||||||| || Sbjct 117035 AGGGATTCCACCTGATCAACAACGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 116976 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 ||| ||| ||||||||||||||| |||| Sbjct 116975 TACTTTGGCCGATTACAATATTCAGAAAG 116947 >seq104 Length=152162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || ||| | || ||| | ||||| ||| | || Sbjct 4770 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 4711 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| || || | || | ||| ||||||||||| || || || || | Sbjct 4710 GATACAATTGAGA-ACGTAAAAAGTAAGATTCAA-GACAAAGAAGGCATCCCTCCAGATC 4653 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 |||||||| |||||||||| || Sbjct 4652 AACAGCGGCTTATTTTTGCTGG 4631 >seq3104 Length=412 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || ||||| | || || ||| ||||||| | |||||||| | || Sbjct 345 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 286 Query 25058 TGACACTATCGAGTCACTGAA--GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| || || ||| | || |||||| | || || ||||| || |||||||| || Sbjct 285 TGATACAATAGAGAATGTAAAAGGCAAAATA-CA-GGATAAAGAGGGAATTCCACCAGAT 228 Query 25116 CAACAGCGGATTATTTTTGCCGG 25138 || ||||| | ||||||||||| Sbjct 227 CAGCAGCGTTTGATTTTTGCCGG 205 >seq1633 Length=565 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || ||||| | || || ||| ||||||| | |||||||| | || Sbjct 221 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 280 Query 25058 TGACACTATCGAGTCACTGAA--GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| || || ||| | || |||||| | || || ||||| || |||||||| || Sbjct 281 TGATACAATAGAGAATGTAAAAGGCAAAATA-CA-GGATAAAGAGGGAATTCCACCAGAT 338 Query 25116 CAACAGCGGATTATTTTTGCCGG 25138 || ||||| | ||||||||||| Sbjct 339 CAGCAGCGTTTGATTTTTGCCGG 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433270757235785