Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq41 226 3e-54 >seq41 Length=297594 Score = 226 bits (250), Expect = 3e-54 Identities = 267/360 (74%), Gaps = 10/360 (3%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| || || |||||||| |||||||| || ||||| || | ||| ||||| || || Sbjct 63418 TCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCTTTTTC 63477 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || ||||| || || || || ||||| || |||||||| || ||||| || || Sbjct 63478 AACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGAACGCG 63537 Query 93236 ACAATACGTTCGGCAAA-----ATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 || | |||||||| ||| ||| |||| | || | ||||| |||||||||| Sbjct 63538 ACCAAACGTTCGGAAAACGGTGATTGGCGG--TCACCG---ATCCAACGCAAAGCCCAAT 63592 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGT 93350 | ||||||||||| | ||| || | |||||| || ||||| || || |||| ||||| Sbjct 63593 CTGCTTTTTTCTTCACACACGGAATTGTTTCAATTGCGTTGAACAGAAAATCACGCTCCA 63652 Query 93351 CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCA 93410 ||| ||| || ||||| || || || |||| ||||| || ||||||||||| || | Sbjct 63653 CCGGATCACGGATGTAGGTGTCAATCAACAAGCTGTACATCTCGGAATGGACATTTTCTA 63712 Query 93411 TTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATC 93470 | ||||||||||| || ||||| | | ||||| || | || | |||||||||||||| Sbjct 63713 TAGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAAAATC 63772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556785352322360