Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7731 143 5e-29 seq308 123 5e-23 seq389 118 2e-21 seq51 118 2e-21 seq104 111 3e-19 seq3104 96.9 6e-15 seq1633 96.9 6e-15 seq6644 84.2 4e-11 >seq7731 Length=250 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || ||||| || || || | Sbjct 22 CCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCC 81 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| ||||| || || || || || ||||| ||||| Sbjct 82 AGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 141 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| || |||||||| | || || Sbjct 142 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACC 201 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || ||||||||||| || |||||||| Sbjct 202 TCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 248 >seq308 Length=9352 Score = 123 bits (136), Expect = 5e-23 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| ||||| ||||| ||||| | | |||||| || |||||||| || || || ||||| Sbjct 188 TAATTGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 247 Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 ||| |||||||| || || || ||||| | || ||| |||||||| |||||||||| Sbjct 248 AAT-TTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTT 306 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||||||||| ||||| || |||||| Sbjct 307 TGCCAGTGAGGGTCTTAACGAAAATTTGCATT 338 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||| | ||||| ||||||||||| || || || || ||||| || Sbjct 1166 CTTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATCCCCTCTTTATCCTGAATTTT 1225 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || || || | ||||| | ||| ||||||| || |||||||| || || Sbjct 1226 ACCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 1285 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| || || || |||||||||||| Sbjct 1286 GAGAGTTTTCACAAATATCTGCATT 1310 >seq389 Length=4972 Score = 118 bits (130), Expect = 2e-21 Identities = 119/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| ||| | ||||| ||||| | | |||||| || |||||||| || || || ||||| Sbjct 3896 TAATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 3955 Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 ||| |||||||| || ||| || ||||| | || ||| |||||||| |||||||||| Sbjct 3956 AAT-TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTT 4014 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||||||||| || || || |||||| Sbjct 4015 TGCCGGTGAGGGTCTTAACAAAAATTTGCATT 4046 Score = 109 bits (120), Expect = 1e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | | ||| || || |||||||| ||||| || ||||| || |||||| Sbjct 4194 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT-TTTGCC 4252 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || ||||||| || ||| |||||||| ||||||||||| || ||||| Sbjct 4253 TTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAG 4312 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||| Sbjct 4313 GGTCTTAACGAAAATTTGCATT 4334 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || ||||| | |||||| || |||||||| || || || |||||||| || || Sbjct 4761 CCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCC 4820 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || ||||| | || ||| |||||||| ||||||||||| || |||||| Sbjct 4821 TTCACATTTTCAATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 4880 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| Sbjct 4881 GTCTTAACAAAAATTTGCAT 4900 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | | ||| || || |||||||| || || || |||||||| |||||| Sbjct 3622 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAAT-TTTGCC 3680 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || ||||| | || ||| |||||||| ||||||||||| || ||||| Sbjct 3681 TTTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAG 3740 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||| Sbjct 3741 GGTCTTAACGAAAATTTGCATT 3762 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||| ||| || || || || | | ||| || || |||||||| || || || ||||| Sbjct 4467 TAACTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTG 4526 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || | || || ||| || ||||| | || ||| |||||||| ||||||||||| Sbjct 4527 AATTTTACCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 4586 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| |||||||| Sbjct 4587 CCCAGTAAGCGTTTTAACGAAAATCTGCAT 4616 >seq51 Length=255661 Score = 118 bits (130), Expect = 2e-21 Identities = 119/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| ||| | ||||| ||||| | | |||||| || |||||||| || || || ||||| Sbjct 1077 TAATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 1018 Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 ||| |||||||| || ||| || ||||| | || ||| |||||||| |||||||||| Sbjct 1017 AAT-TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTT 959 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||||||||| || || || |||||| Sbjct 958 TGCCGGTGAGGGTCTTAACAAAAATTTGCATT 927 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || ||||| | |||||| || |||||||| || || || |||||||| || || Sbjct 212 CCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCC 153 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || ||||| | || ||| |||||||| ||||||||||| || |||||| Sbjct 152 TTCACATTTTCAATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 93 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| Sbjct 92 GTCTTAACAAAAATTTGCAT 73 Score = 109 bits (120), Expect = 1e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | | ||| || || |||||||| ||||| || ||||| || |||||| Sbjct 779 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT-TTTGCC 721 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || ||||||| || ||| |||||||| ||||||||||| || ||||| Sbjct 720 TTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAG 661 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||| Sbjct 660 GGTCTTAACGAAAATTTGCATT 639 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | | ||| || || |||||||| || || || |||||||| |||||| Sbjct 1351 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAAT-TTTGCC 1293 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || ||||| | || ||| |||||||| ||||||||||| || ||||| Sbjct 1292 TTTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAG 1233 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||| Sbjct 1232 GGTCTTAACGAAAATTTGCATT 1211 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||| ||| || || || || | | ||| || || |||||||| || || || ||||| Sbjct 506 TAACTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTG 447 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || | || || ||| || ||||| | || ||| |||||||| ||||||||||| Sbjct 446 AATTTTACCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 387 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| |||||||| Sbjct 386 CCCAGTAAGCGTTTTAACGAAAATCTGCAT 357 >seq104 Length=152162 Score = 111 bits (122), Expect = 3e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| | | || || ||||| | | ||| || || |||||||| ||||| || ||||||| Sbjct 3995 ACTACGTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAA 4054 Query 68374 TCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | |||||||| || ||| || ||||| | | ||| |||||||| ||||||||||| Sbjct 4055 T-TTTGCCTTTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTG 4113 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||| ||||| || |||||| Sbjct 4114 CCGGTGAGGGTCTTAACGAAAATTTGCATT 4143 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 21331 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 21390 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || |||||||||| || ||| ||||| | || || |||||||| || Sbjct 21391 CTTTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 21450 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| |||||||||||||| || Sbjct 21451 AGAGTCTTCACGAATATCTGCATAAT 21476 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 20612 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20671 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 20672 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20731 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 20732 AATGTTTTCACAAAAATCTGCAT 20754 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 20899 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20958 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 20959 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 21018 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 21019 AATGTTTTCACAAAAATCTGCAT 21041 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || ||||| |||||||| |||||||| || Sbjct 20325 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTA 20384 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 20385 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20444 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 20445 AATGTTTTCACAAAAATCTGCAT 20467 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||||| || || || |||||||| |||||||||||||| Sbjct 4631 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 4690 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||| || || |||| || || ||||| | || || |||||||| || | Sbjct 4691 TTTACGTTCTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 4750 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || ||||||||||| Sbjct 4751 GTCTTCACAAATATCTGCAT 4770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | || || ||||||||||| || || || || ||||| || Sbjct 4968 CTTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 5027 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 5028 ACCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 5087 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| || || || |||||||||||| Sbjct 5088 GAGAGTTTTCACAAATATCTGCATT 5112 >seq3104 Length=412 Score = 96.9 bits (106), Expect = 6e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || || || |||||||| || || || || || || |||||| Sbjct 205 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTAT-TTTGCC 263 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || ||| |||||||| ||||||||||| || ||||| Sbjct 264 TTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 323 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| |||||||| |||||| Sbjct 324 GGTCTTAACGAATATTTGCATT 345 >seq1633 Length=565 Score = 96.9 bits (106), Expect = 6e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || || || |||||||| || || || || || || |||||| Sbjct 361 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTAT-TTTGCC 303 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || ||| |||||||| ||||||||||| || ||||| Sbjct 302 TTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 243 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| |||||||| |||||| Sbjct 242 GGTCTTAACGAATATTTGCATT 221 >seq6644 Length=275 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || | | || || || |||||||| || || || || || || || Sbjct 99 CTTACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTAT-TT 157 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || || | || ||| |||||||| ||||||||||| || | Sbjct 158 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAG 217 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| ||||| || ||||| Sbjct 218 TAAGCGTCTTAACGAAAATTTGCAT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921497531685080