Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq52 104 6e-17 seq308 98.7 2e-15 seq104 98.7 2e-15 seq6644 87.8 4e-12 seq3104 87.8 4e-12 seq1633 87.8 4e-12 seq271 86.0 1e-11 >seq52 Length=254519 Score = 104 bits (114), Expect = 6e-17 Identities = 196/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 || || ||||| ||||| ||| ||||||||||||||| || || ||| || || Sbjct 179389 CCAAATTGGCCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 179330 Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486 | || | ||||| | |||| ||||||||||||| || || ||| || ||| Sbjct 179329 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCA 179270 Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTG 325544 ||| |||| | ||| || |||||||| || |||| | |||||||||||| | Sbjct 179269 ACGGAACCAGCAAGCTGAGCGACCTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAG 179212 Query 325545 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTT 325604 | | | ||||| ||||| ||| || || |||||||| | ||| |||||||| || | Sbjct 179211 TAAACAAAACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCT 179152 Query 325605 CCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647 | || | | || ||||||||| | || ||||||||||| Sbjct 179151 CGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 179109 >seq308 Length=9352 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||| || || |||||||||||| ||| || || ||||||||||| ||||| Sbjct 1167 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATCCCCTCTTTATCCTGAATTTTA 1226 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 |||| || ||||| || || || | ||| ||||| || || || || ||||| || Sbjct 1227 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 1286 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 1287 AGAGTTTTCACAAATATCTGCATT 1310 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| ||||| ||||||||||| ||||| || Sbjct 8992 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 9051 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||| ||||| | ||||| || ||||| || || Sbjct 9052 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 9111 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| Sbjct 9112 GTCTTAACGAAAATTTGCAT 9131 >seq104 Length=152162 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || |||||||||||||| ||| ||| ||||| ||||||||||| ||||| Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 |||| || ||||| || | || | ||| ||||| || || || || ||||| || Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 5089 AGAGTTTTCACAAATATCTGCATT 5112 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| ||||| ||||||||||| |||||| || Sbjct 3718 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTCCCT 3777 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||| ||||| | ||||| || ||||| || || Sbjct 3778 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 3837 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| Sbjct 3838 GTCTTAACAAAAATTTGCAT 3857 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||| || ||| ||| |||||||||||||| || ||||| || Sbjct 4003 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 4062 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||| ||||| | ||||| || || ||||| || Sbjct 4063 TTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGAGG 4122 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 4123 GTCTTAACGAAAATTTGCATT 4143 >seq6644 Length=275 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||| |||||| ||| ||| ||||| ||||||||||| ||||| Sbjct 100 TTACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 159 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 |||| || || ||||| | ||| | ||| ||||| | ||||| || ||||| || Sbjct 160 CCTTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 219 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| Sbjct 220 AGCGTCTTAACGAAAATTTGCAT 242 >seq3104 Length=412 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| ||||| ||||||||||| ||||| || Sbjct 205 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 264 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||| ||||| | ||||| || || || || || Sbjct 265 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 324 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| |||||||| |||||| Sbjct 325 GTCTTAACGAATATTTGCATT 345 >seq1633 Length=565 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| ||||| ||||||||||| ||||| || Sbjct 361 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||| ||||| | ||||| || || || || || Sbjct 301 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 242 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| |||||||| |||||| Sbjct 241 GTCTTAACGAATATTTGCATT 221 >seq271 Length=23410 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| ||||| ||||||||||| ||||| || Sbjct 361 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||| ||||| | ||||| || ||||| || || Sbjct 301 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 242 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| Sbjct 241 GTCTTAACGAAAATTTGCAT 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179490575863842