Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq52 109 1e-18 >seq52 Length=254519 Score = 109 bits (120), Expect = 1e-18 Identities = 228/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | || || ||| Sbjct 179440 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGG 179381 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||||| ||| ||||||||||||||| || || ||| || || | || | Sbjct 179380 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 179321 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| | |||| ||||||||||||| || || ||| || |||||| |||| Sbjct 179320 ATGGTGCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 179261 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTGAATATATCA 297674 | ||| || |||||||| || |||| | |||||||||||| | | | | | Sbjct 179260 GCAAGCTGAGCGACCTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAGTAAACAAAA 179203 Query 297675 CTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CG 297733 |||| ||||| ||| || || |||||||| | ||| |||||||| || || || | Sbjct 179202 CTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCCA 179143 Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | || ||||||||| | || ||||||||||| Sbjct 179142 TGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 179109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102726837884650