Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq36 109 6e-19 seq1 107 2e-18 seq7 98.7 1e-15 seq8 95.1 1e-14 >seq36 Length=318066 Score = 109 bits (120), Expect = 6e-19 Identities = 106/130 (82%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 56980 AACAAAT-TAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCC 57038 ||||||| ||| |||| |||||||| |||| |||| | |||||||||| |||| ||| Sbjct 273051 AACAAATATAA--TTTA-GAAAAATTC-CTCCCCGGCCGGGAATCGAACCCGGGTCGCCC 272996 Query 57039 GCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGAATATATAACTTGAATA 57098 ||||||||||||| ||||||||||||||||||||||||| || || || | ||| | | Sbjct 272995 GCGTGACAGGCGGGAATACTCACCACTATACTACCGAGGACTG-ATTGATTAATTGTAAA 272937 Query 57099 TTGCAATTTA 57108 || |||||| Sbjct 272936 TTTTAATTTA 272927 >seq1 Length=1221358 Score = 107 bits (118), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||| Sbjct 828083 GAAAAATGTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATA 828142 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 828143 CTCACCACTATACTACCGAGGA 828164 >seq7 Length=621157 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 || |||||| |||| | |||||||||| |||| |||||||||||||||| |||||||| Sbjct 23054 ATATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCAC 23113 Query 57062 CACTATACTACCGAGGA 57078 ||||||||||||||||| Sbjct 23114 CACTATACTACCGAGGA 23130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 || |||||| |||| | |||||||||| |||| |||||||||||||||| |||||||| Sbjct 71800 ATATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCAC 71859 Query 57062 CACTATACTACCGAGGA 57078 ||||||||||||||||| Sbjct 71860 CACTATACTACCGAGGA 71876 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 22360 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 22419 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 22420 TACTACCGAGGAT 22432 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 71106 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71165 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 71166 TACTACCGAGGAT 71178 >seq8 Length=570214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 525728 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 525787 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 525788 TACTACCGAGGA 525799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543139201455760