Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq53 102 8e-17 seq6644 98.7 1e-15 seq104 87.8 2e-12 seq7731 86.0 6e-12 seq308 86.0 6e-12 seq271 86.0 6e-12 seq4475 82.4 8e-11 >seq53 Length=248793 Score = 102 bits (112), Expect = 8e-17 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 ||| ||||||| |||| || | |||||| |||||| | ||||| || || |||||| Sbjct 132425 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 132484 Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283 ||||| ||||| | || ||| ||| || || | | |||| | ||| || || Sbjct 132485 ATGTCATATTGAAGAATACCTTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 132544 Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343 | |||||||||| ||||| ||| ||||||||| ||||| || | |||||| |||| Sbjct 132545 AACTGTTTTGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 132604 Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403 | || || |||| | | |||| || ||| | || ||| || | | |||||| Sbjct 132605 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAATGGATATCGCATCAAAATGAAAGCA 132664 Query 154404 TCGGCGAGCCCTTG 154417 || || | |||||| Sbjct 132665 TCCGCCAACCCTTG 132678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873 |||||| | |||||||||||| | ||| |||| ||| || ||||| | || Sbjct 133277 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGG 133336 Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933 ||||||| |||||| | ||| || | ||| ||||| || | ||| || | ||| Sbjct 133337 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 133396 Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993 | || || |||||||| | || | || ||||| |||| || ||| ||| | Sbjct 133397 AAGGGCATAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCCGTG-TTCTTTTTCGCGT 133455 Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047 ||| ||||||| ||||||| |||||||| || || ||||| || || | ||| || Sbjct 133456 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCC 133510 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 |||||||||||||||| ||| | || ||| || || ||||| |||| ||||||| Sbjct 133028 TATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 133087 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 || || | ||||| || |||||||| | || |||| ||||| ||||| | ||| | Sbjct 133088 GACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCGGTTTCAATTTGAGAC 133147 Query 154746 TCAATAATTG 154755 ||||| |||| Sbjct 133148 TCAATTATTG 133157 >seq6644 Length=275 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| |||| | |||||||| || || |||||||| ||||| || |||||||| Sbjct 99 CTTACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTT 158 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | ||||||| | |||||||| | ||| | ||| || || || Sbjct 159 GCCTTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 218 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | || || |||||||||||||| Sbjct 219 AAGCGTCTTAACGAAAATTTGCAT 242 >seq104 Length=152162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 || ||||| || || |||||||||||||| ||||| ||||| |||||| ||| | | Sbjct 4018 CGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATT 4077 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || || || || ||||| | ||| | ||| |||||||| | || || ||||||||| Sbjct 4078 GTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTAACGAAAATT 4137 Query 64439 TGCATT 64444 |||||| Sbjct 4138 TGCATT 4143 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 |||||||| || || |||||||| ||||| || |||||||| |||||| ||| | | Sbjct 3733 CGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTCCCTTTTACATTCTCTATT 3792 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| | |||||||| | ||| | ||| || || || | || || || |||||| Sbjct 3793 GTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTCTTAACAAAAATT 3852 Query 64439 TGCAT 64443 ||||| Sbjct 3853 TGCAT 3857 >seq7731 Length=250 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || || ||||| ||||| | ||| ||| | || Sbjct 37 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCC 96 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| || || || || || || || Sbjct 97 TCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 156 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || ||| | ||||| || | || | |||| Sbjct 157 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTC 216 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || || || || ||||| Sbjct 217 TTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 248 >seq308 Length=9352 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 |||||||| || || |||||||| ||||| || |||||||| |||||| ||| | | Sbjct 9007 CGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTCTCTATT 9066 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| | |||||||| | ||| | ||| || || || | || || ||||||||| Sbjct 9067 GTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTCTTAACGAAAATT 9126 Query 64439 TGCAT 64443 ||||| Sbjct 9127 TGCAT 9131 >seq271 Length=23410 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 |||||||| || || |||||||| ||||| || |||||||| |||||| ||| | | Sbjct 346 CGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTCTCTATT 287 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| | |||||||| | ||| | ||| || || || | || || ||||||||| Sbjct 286 GTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTCTTAACGAAAATT 227 Query 64439 TGCAT 64443 ||||| Sbjct 226 TGCAT 222 >seq4475 Length=347 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64331 GGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG 64390 || |||||||| ||||| || |||||||| |||||| ||| | ||||||| | Sbjct 347 GGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGATGGT 288 Query 64391 TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| | ||| ||||| || | ||| || |||||||||||||| Sbjct 287 TCCACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTCTTAACGAAAATTTGCAT 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499577104375160