Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq244 96.9 3e-15 >seq244 Length=40369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 ||||| || ||||| | || | ||||||||||| || || | |||||| ||||||||| Sbjct 15417 CCGTCTCGTCCGGCACGCCCAGTTTCTTGATAATAGCCTTCGACTGATTTCGGCATACTG 15358 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCG 118296 || || || || || |||||||| || || || |||||||| ||||| || || |||| Sbjct 15357 TGGTGGATGACGAAACGCACGTCCGGCTTGTCTATGCCCATGCCGAAAGCGATGGTCG 15300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381722367693816