Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq308 104 2e-17 seq389 100 2e-16 seq51 100 2e-16 seq104 95.1 9e-15 seq271 91.5 1e-13 seq6644 84.2 2e-11 >seq308 Length=9352 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||| || || || |||||||||| ||||| || ||||||||| || || || Sbjct 188 TAATTGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 247 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||||| ||||||| ||||||| || ||| ||| || || || || |||||||| Sbjct 248 AATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 307 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 308 GCCAGTGAGGGTCTTAACGAAAATTTGCAT 337 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| ||||||||||||| || || ||||||||| || || || ||||||| | Sbjct 8992 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 9051 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| ||| || || || || |||||||| || || || Sbjct 9052 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 9111 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 9112 GTCTTAACGAAAATTTGCAT 9131 >seq389 Length=4972 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||| | || || |||||||||| ||||| || ||||||||| || || || Sbjct 3896 TAATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 3955 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||||| ||||||| | ||||| || ||| ||| || || || || |||||||| Sbjct 3956 AATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 4015 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 4016 GCCGGTGAGGGTCTTAACAAAAATTTGCAT 4045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| |||||||||| || || || |||||||||||| || || ||||||| | Sbjct 4194 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 4253 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| ||||||| || || ||| || || || || |||||||| || || || Sbjct 4254 TTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 4313 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 4314 GTCTTAACGAAAATTTGCAT 4333 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| |||||||||| || || || ||||||||| || || || |||||||| | Sbjct 3622 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 3681 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| ||||||| || || ||| || || || || |||||||| || || || Sbjct 3682 TTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 3741 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 3742 GTCTTAACGAAAATTTGCAT 3761 >seq51 Length=255661 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||| | || || |||||||||| ||||| || ||||||||| || || || Sbjct 1077 TAATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 1018 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||||| ||||||| | ||||| || ||| ||| || || || || |||||||| Sbjct 1017 AATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 958 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 957 GCCGGTGAGGGTCTTAACAAAAATTTGCAT 928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| |||||||||| || || || |||||||||||| || || ||||||| | Sbjct 779 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 720 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| ||||||| || || ||| || || || || |||||||| || || || Sbjct 719 TTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 660 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 659 GTCTTAACGAAAATTTGCAT 640 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| |||||||||| || || || ||||||||| || || || |||||||| | Sbjct 1351 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 1292 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| ||||||| || || ||| || || || || |||||||| || || || Sbjct 1291 TTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 1232 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 1231 GTCTTAACGAAAATTTGCAT 1212 >seq104 Length=152162 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| |||||||||| || || || |||||||||||| || || |||||||| | Sbjct 4003 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 4062 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| || ||| ||| || || || || |||||||| || || || Sbjct 4063 TTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGAGG 4122 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 4123 GTCTTAACGAAAATTTGCAT 4142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| ||||||||||||| || || ||||||||| || || || ||||| | | Sbjct 3718 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTCCCT 3777 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| ||| || || || || |||||||| || || || Sbjct 3778 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 3837 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 3838 GTCTTAACAAAAATTTGCAT 3857 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| |||||| || ||| ||||||||| || || || |||||| Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||||||| |||| || || || ||| || || | ||||||||||| || || Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| ||||| || ||||| || Sbjct 5089 AGAGTTTTCACAAATATCTGCATTTT 5114 >seq271 Length=23410 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| ||||||||||||| || || ||||||||| || || || ||||||| | Sbjct 361 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| ||| || || || || |||||||| || || || Sbjct 301 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 242 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 241 GTCTTAACGAAAATTTGCAT 222 >seq6644 Length=275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||||||||| || || ||||||||| || || || ||||||| ||||||| | Sbjct 112 ATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTC 171 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 ||||| ||||| ||| || || || || |||||||| || || || || || || Sbjct 172 TCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTCTTAACG 231 Query 15166 AAAATTTGCAT 15176 ||||||||||| Sbjct 232 AAAATTTGCAT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357344788405115