Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq104 109 5e-19 seq389 102 7e-17 seq308 102 7e-17 seq51 102 7e-17 >seq104 Length=152162 Score = 109 bits (120), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 4010 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACAT 4069 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | |||||||| | ||| | ||||||||||| || || || | Sbjct 4070 TCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTAA 4129 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 4130 CGAAAATTTGCAT 4142 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| || | Sbjct 20622 ATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTACCCTTCACAT 20681 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 20682 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 20741 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 20742 CAAAAATCTGCATACCGCCAC 20762 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| || | Sbjct 20909 ATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTACCCTTCACAT 20968 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 20969 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 21028 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 21029 CAAAAATCTGCATACCGCCAC 21049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||| ||||| |||||||||||||| || | Sbjct 20335 ATATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTACCCTTCACAT 20394 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 20395 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 20454 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 20455 CAAAAATCTGCATACCGCCAC 20475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || |||| |||||| || || ||||||||||| ||||| |||||||| Sbjct 21331 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 21390 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||| || | || ||||| || || | ||||| || || Sbjct 21391 CTTTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 21450 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || ||||| Sbjct 21451 AGAGTCTTCACGAATATCTGCAT 21473 >seq389 Length=4972 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| | || || ||||||| ||||| || || || ||||| || |||||||||||| Sbjct 3897 AATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGA 3956 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | |||| |||||||| | || ||||| | ||| | |||||| Sbjct 3957 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 4016 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || |||||||||||||| Sbjct 4017 CCGGTGAGGGTCTTAACAAAAATTTGCAT 4045 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 3629 ATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACAT 3688 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||||| ||||| || | |||||||| | ||| | |||||||| || || || || | Sbjct 3689 TTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 3748 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 3749 CGAAAATTTGCAT 3761 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| |||||||||||||| ||||| ||| | Sbjct 4201 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 4260 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||||| ||||| || | |||||||| | ||| | |||||||| || || || || | Sbjct 4261 TTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 4320 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 4321 CGAAAATTTGCAT 4333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 4486 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCTTTCACATTC 4545 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| |||||||| | || ||||| | ||| | ||||| || || || ||||| || Sbjct 4546 TCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 4605 Query 45330 AAAATTTGCAT 45340 ||||| ||||| Sbjct 4606 AAAATCTGCAT 4616 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 ||||| || ||||| ||||| || ||||||||||||||||| || | ||| | Sbjct 4776 CGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCCTTCACATTTTCAATT 4835 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 |||||||| | || ||||| | ||| | |||||||| || || || || ||||||||| Sbjct 4836 GTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAACAAAAATT 4895 Query 45336 TGCAT 45340 ||||| Sbjct 4896 TGCAT 4900 >seq308 Length=9352 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || ||||||| ||||| || || || ||||| || |||||||||||| Sbjct 189 AATTGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGA 248 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | ||||| |||||||| | || ||||| | ||| | |||||| Sbjct 249 ATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 308 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||||||||| Sbjct 309 CCAGTGAGGGTCTTAACGAAAATTTGCAT 337 >seq51 Length=255661 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| | || || ||||||| ||||| || || || ||||| || |||||||||||| Sbjct 1076 AATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGA 1017 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | |||| |||||||| | || ||||| | ||| | |||||| Sbjct 1016 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 957 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || |||||||||||||| Sbjct 956 CCGGTGAGGGTCTTAACAAAAATTTGCAT 928 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| |||||||||||||| ||||| ||| | Sbjct 772 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 713 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||||| ||||| || | |||||||| | ||| | |||||||| || || || || | Sbjct 712 TTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 653 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 652 CGAAAATTTGCAT 640 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 1344 ATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACAT 1285 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||||| ||||| || | |||||||| | ||| | |||||||| || || || || | Sbjct 1284 TTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 1225 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 1224 CGAAAATTTGCAT 1212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 487 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCTTTCACATTC 428 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| |||||||| | || ||||| | ||| | ||||| || || || ||||| || Sbjct 427 TCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 368 Query 45330 AAAATTTGCAT 45340 ||||| ||||| Sbjct 367 AAAATCTGCAT 357 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 ||||| || ||||| ||||| || ||||||||||||||||| || | ||| | Sbjct 197 CGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCCTTCACATTTTCAATT 138 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 |||||||| | || ||||| | ||| | |||||||| || || || || ||||||||| Sbjct 137 GTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAACAAAAATT 78 Query 45336 TGCAT 45340 ||||| Sbjct 77 TGCAT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451941959216440