Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq41 143 3e-29 >seq41 Length=297594 Score = 143 bits (158), Expect = 3e-29 Identities = 255/370 (69%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973 || ||||||| | || || | ||||||||||| ||||| |||||||| ||||| || | Sbjct 63413 AGACCTCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCT 63472 Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 |||| | ||| || || | ||||| ||||| |||||||| | || || || || |||| Sbjct 63473 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGA 63532 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093 | || |||| || ||| |||| | || | ||||||| |||| ||||| | Sbjct 63533 ACGCGACCAAACGTTCGGAAAACGGTGATTGGCGGTCACCGATCCAACGCAAAGCCCAAT 63592 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 | || |||| || || ||||| || ||||| || ||||| |||| | | | | || Sbjct 63593 CTGCTTTTTTCTTCACACACGGAATTGTTTCAATTGCGTTGAACAGA--AAATCACGCTC 63650 Query 133154 CCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211 | ||| ||| | ||||||||| || | ||||| || || || || || || Sbjct 63651 CACCGGATCACGGATGTAGGTGTCAATCAACAAGCTGTACATCTCGGAATGGACATTTTC 63710 Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271 || || ||||| ||||| || ||| | || || ||| ||| || | |||||||| || Sbjct 63711 TATAGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAAAA 63770 Query 133272 ACGCTCGACC 133281 || || ||| Sbjct 63771 TCGTTCCACC 63780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500105032837760