Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 336 2e-86 seq99 154 1e-31 seq117 107 1e-17 seq53 89.7 4e-12 >seq3 Length=883620 Score = 336 bits (372), Expect = 2e-86 Identities = 495/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 580123 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGA 580064 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | |||| ||||| || | | ||||| || |||||| || |||||||| | | Sbjct 580063 CCTCAAAAATGCCATCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGT 580004 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 580003 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 579944 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || ||||||| ||||||||| | ||||| ||| |||| || |||| Sbjct 579943 CCGCTGTTGGTTCGTTGATAATTCGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 579884 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| ||||| || | | Sbjct 579883 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCGTCCTTAA 579824 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 579823 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTGA 579764 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| ||| || | | || ||| || || || ||| |||| || | ||||| Sbjct 579763 TTTCTTCCGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 579704 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 | ||| |||| ||||||||||||||||| | |||||| || || || ||| |||| Sbjct 579703 TTCCATCATTGATAACTTTAAATGGCCAATGTTTCATGTCAGACTGCACAGCAGCATCAT 579644 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 579643 CAAATCGACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 579584 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 | |||| || || ||||| |||||||| |||| || || || || | |||||| || Sbjct 579583 CCTGATTCTTTGCCGCATCGCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 579524 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 579523 GCGTGGTACGATTCCCTTGATCGTTTGCAATAATTTCAACTTTACCATGCTGGAACACGC 579464 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 579463 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 579423 Score = 123 bits (136), Expect = 2e-22 Identities = 198/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| || |||||||| |||||||| | ||| || |||| ||| ||| Sbjct 580593 ATACCTGCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCA 580534 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 |||||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 580533 TTGAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 580475 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 ||||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 580474 TACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 580415 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | |||||||| || ||||| |||| ||| Sbjct 580414 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATAGT 580355 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | | ||||| ||| || Sbjct 580354 GGTGTAGAAATCAATGCCTTCGTAGAGACTATCAATTTCTAT 580313 >seq99 Length=156952 Score = 154 bits (170), Expect = 1e-31 Identities = 347/513 (68%), Gaps = 20/513 (4%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||| || |||| | ||||||||||||||||| | || |||||||| || ||| Sbjct 105752 GGTTCATTGATGATTCGAACTACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 105693 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||||| |||||| ||||| |||||||| || | ||||||| | |||||||| Sbjct 105692 TGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTTG 105633 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 105632 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 105573 Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || | | ||| ||| |||| | | | | || || | ||||| | Sbjct 105572 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTGAGTTGAACGTTCGGTTTGCT--TG 105518 Query 518438 ACATTAATA--ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAA 518495 | || || ||| |||| ||||| ||| ||| | ||||| ||| | ||| Sbjct 105517 ATTTTTCTAACACTGTAAACGGCCACATTTTACGATCCGCTTGAAGACTCTTGTCCGACC 105458 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCT 518554 | |||| ||||| | || || ||||| || | ||||| ||||| | | || | Sbjct 105457 ATTCTCGACCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC- 105399 Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGAT 518611 |||| ||| || | ||| || |||||| | | || | |||||| | ||||| || Sbjct 105398 TGATTTTTCGCGGAATCGCCGATCAGACGCTCACCTTCCGGTGTAAAAGCCACATACGAC 105339 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 || || | ||||| || |||||||| |||||||||||||| |||||| | | || Sbjct 105338 GGGGTAATACGATTGCCCTGATCATTGGCAATAATTTCAACACGACCATTCTTGAAAACT 105279 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 || || ||||||| || || ||| |||||| Sbjct 105278 CCAAC---ACTAAAAATTATT--TAATTCAATA 105251 >seq117 Length=133494 Score = 107 bits (118), Expect = 1e-17 Identities = 125/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | |||||||| Sbjct 58645 TATATTTGTGGTACAGATGAATATGGCACTGCCACAGAGACAAAAGCTATTGAGGAAGGT 58704 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 || ||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 58705 GTGACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 58764 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACAG 841494 |||||||| |||||||| ||||||| | | | |||||| ||||| Sbjct 58765 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAGAACAG 58809 >seq53 Length=248793 Score = 89.7 bits (98), Expect = 4e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 400502 GACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCACCTTT 400561 ||| |||||||||||| | ||||||| | |||| || ||||| || || || | | |||| Sbjct 132025 GACGGTTTGGGAAATTTCCCAAAAATGCGTCATAGACATGGCTGCCGAAAGGGGAGCTTT 131966 Query 400562 TGTTGATCAAACTCAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGATTAAA 400621 | |||| ||| | ||| ||||| | |||||| | | || | | ||| | ||| | Sbjct 131965 TATTGACCAATCCCAGTCGTTGAATATTCACATTGCTGAGCCCAACTATGCTAAATTGAC 131906 Query 400622 TTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTGAGATC 400681 || | || || | |||| || |||||| ||||| || ||||| ||||||||| | Sbjct 131905 GTCGATGCATTTCTACGGCTGGAAGAGAGGTCTGAAAACTGGGATGTACTATTTGAGAAC 131846 Query 400682 TAAACCAGC 400690 || || || Sbjct 131845 CAAGCCGGC 131837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780284533116334