Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 250 3e-61 seq99 138 1e-27 >seq3 Length=883620 Score = 250 bits (276), Expect = 3e-61 Identities = 514/756 (68%), Gaps = 14/756 (2%) Strand=Plus/Minus Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 ||||| || || || || ||||| || || || || ||||| | || || || ||| Sbjct 580229 AACGTGCGTTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 580170 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || || ||||| | || || |||||||| | ||| || | | | Sbjct 580169 GACATGTCCTTCTTGTTCTTTCGCTTAAACTCAGCTACGAAATGATTTACCATGCGATTG 580110 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||| ||||| || || Sbjct 580109 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 580050 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 | || ||| | || | || |||||||||||||||||||| |||||||| || || || Sbjct 580049 TCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGTCAAATATCAGAACA 579990 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||||| || || | || |||| || || || || || || ||||| |||||||| Sbjct 579989 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 579931 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || ||||| || || ||| |||| |||| ||| ||| | || ||||| ||||| || | Sbjct 579930 GTTGATAATTCGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 579872 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || ||||||||||| || ||||| || || | || |||||| | || | || || | Sbjct 579871 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCGTCCTTAACAGTTTTTCCCA 579812 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT--CGATGAAATCTCTTCAGC 7812 ||| | ||| || | || ||||| || | ||||| || || || ||||| | Sbjct 579811 AATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTG--ATTTCTTCCGG 579754 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | ||| |||| || || || | || |||| ||| | ||||| || || | Sbjct 579753 TGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGTTCCATC 579697 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 |||||| ||| | | ||||| |||||| || || || || ||| Sbjct 579696 ATTGATAACTTTAAATGGCCAATGTTTCATGTCAGACTGCACAGCAGCATCATCAAATCG 579637 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | |||||||| ||||| |||||||||||||| || | || |||| || || || Sbjct 579636 ACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACCTGATT 579577 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| ||||| || || || || ||||| || || || || || || || ||| || Sbjct 579576 CTTTGCCGCATCGCCAATCAGTCGTTCGGTA---TCGGTGAAAGCAACATAACTTGGCGT 579520 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || ||||||||||| ||||| ||||||||||| || Sbjct 579519 GGTACGATTCCCTTGATCGTTTGCAATAATTTCAAC 579484 Score = 131 bits (144), Expect = 2e-25 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || ||||| || || || || || || |||| || |||||||| || || ||| Sbjct 580587 GCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCATTGAAA 580528 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| |||| | |||| ||| || || || || |||||||| ||||| || | | Sbjct 580527 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAATACAACT 580468 Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||||| | ||| || | || | || ||||| | |||||| || |||||| Sbjct 580467 TCATGAATCACT---GCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 580411 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | |||||||||||| | |||||| ||||| || || || ||||| | || Sbjct 580410 AAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATAGTGGTG 580351 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 |||||||||| ||| ||||| | ||||||||| ||| Sbjct 580350 TAGAAATCAATGCCTTCGTAGAGACTATCAATTTCTATG 580312 >seq99 Length=156952 Score = 138 bits (152), Expect = 1e-27 Identities = 318/468 (68%), Gaps = 17/468 (4%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 |||||||| || || |||| ||| || || |||||||| || |||||||||| || || Sbjct 105752 GGTTCATTGATGATTCGAACTACA-TTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGC 105694 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 ||| ||||| | |||||| || || || || ||||| ||||| || | | |||| || Sbjct 105693 TTGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTT 105634 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | ||| | ||| || || ||||||||||| | |||||||| |||||| ||||| Sbjct 105633 GCCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTC 105574 Query 7810 AGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC 7869 | | ||| |||| |||||||||||| | | || || | ||||| || Sbjct 105573 GGGAGTGAACAATTTCTTTTCACCGTTAACAGTGAGTTGAACGTTCGGTTT----GCTTG 105518 Query 7870 ACCGGGGATAAC-CT-TATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGA 7926 | |||| || || ||| ||| ||| ||| |||| | || || |||||| Sbjct 105517 A-TTTTTCTAACACTGTAAACGGCCACATTTTACGATCCGCTTGAAGACTCTT-GTCCGA 105460 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 | | || || | | |||||| ||||| || || || || | || || ||| Sbjct 105459 CCATTCTCGACCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAA 105400 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC---GTAAACGCGACGTA 8043 || || ||||| | || ||||| ||||| || | |||| ||||| || || || Sbjct 105399 CTGATTTTTCGCGGAATCGCCGATCAGACGCTC---ACCTTCCGGTGTAAAAGCCACATA 105343 Query 8044 CGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| ||||| | ||||| || || || || ||||||||||| || || Sbjct 105342 CGACGGGGTAATACGATTGCCCTGATCATTGGCAATAATTTCAACACG 105295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635046747444760