Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq53 123 3e-23 seq41 114 1e-20 >seq53 Length=248793 Score = 123 bits (136), Expect = 3e-23 Identities = 185/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 || ||||||||| | ||| | || ||||||||| | |||||||||||||| ||||| Sbjct 132448 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCTTT 132507 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 ||| || || || | ||| || | || ||||| | |||| || | || || || Sbjct 132508 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGCT 132567 Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665 ||| || ||| |||||| || |||||||| ||||| | || | || ||||| Sbjct 132568 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 132627 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 | |||||||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 132628 TTCGGATTCAAATGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCACACCAAT 132687 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752 ||||||||||| |||| ||| ||||| Sbjct 132688 ACCAATTGGTCGATGACGTTTGTTAGA 132714 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || ||||| ||||| || ||| || | || || |||||||||| ||| ||| Sbjct 133281 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 133340 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| ||||||||| | || || | | |||| |||| ||| ||||||||||| Sbjct 133341 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 133400 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| || | ||| |||||| |||| | ||| |||| |||||| Sbjct 133401 GCATAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCCGTGTTCTTTTTCGCGTCAAGA 133460 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || || | ||| || || ||||| ||||| ||||| Sbjct 133461 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 133495 >seq41 Length=297594 Score = 114 bits (126), Expect = 1e-20 Identities = 248/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||| | | ||||| || || || || ||||| |||||||| |||| |||| Sbjct 63416 CCTCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCTTTT 63475 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||||| || || || || || |||||||| |||||||| || ||||| || | Sbjct 63476 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGAACG 63535 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTA----TTATGAATCCATTTCAGTGCCCAA 19158 | || | | ||| | ||| | ||| | | ||||| || |||||| Sbjct 63536 CGACCAAACGTTCGGAA-AACGG---TGATTGGCGGTCACCGATCCAACGCAAAGCCCAA 63591 Query 19159 TCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCA 19218 || || || || || ||||| || ||||| || || | || || ||| | |||||| Sbjct 63592 TCTGCTTTTTTCTTCACACACGGAATTGTTTCAATTGCGTTGAACAGAAAATCACGCTCC 63651 Query 19219 TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCT 19278 | | ||| | || | || ||||| || |||||||| || ||||| | ||||||| Sbjct 63652 ACCGGATCACGGATGTAGGTGTCAATCAACAAGCTGTACATCTCGGAATGGACATTTTCT 63711 Query 19279 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAAT 19338 ||||| || || || || || || | | |||||| || | || | ||| | ||||| Sbjct 63712 ATAGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAAAAT 63771 Query 19339 CTTTCGACC 19347 | ||| ||| Sbjct 63772 CGTTCCACC 63780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562032641283960