Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 269 2e-66 seq99 145 6e-29 seq6644 109 4e-18 seq389 104 2e-16 seq176 104 2e-16 seq51 104 2e-16 seq104 100 2e-15 seq3104 98.7 8e-15 seq1633 98.7 8e-15 seq308 98.7 8e-15 seq271 98.7 8e-15 seq127 93.3 3e-13 seq4475 91.5 1e-12 seq10 86.0 5e-11 >seq3 Length=883620 Score = 269 bits (298), Expect = 2e-66 Identities = 391/548 (71%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || || ||||||||||| || | || |||||||| Sbjct 579424 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 579483 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||||||||| || |||||||| || | || || ||| ||||||| ||||||| Sbjct 579484 GTTGAAATTATTGCAAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 579543 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | |||| ||||| ||||| |||| | | |||||| ||| Sbjct 579544 GATACCGAACGACTGATTGGCGATGCGGCAAAGAATCAGGTTGCGTTGAATCCTCATAAT 579603 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||||||||| || || | || || | | ||| ||||| | |||| ||| | Sbjct 579604 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATTTGATGATGCTGCTGTGCAGTCT 579663 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288 || ||||| |||||||| || || || | |||| |||| |||||| | ||| || Sbjct 579664 GACATGAAACATTGGCCATTTAAAGTTATCAATG---ATGGAACGAAACCTAAAATTCAA 579720 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | |||| || |||| |||| ||| |||| ||||||| || Sbjct 579721 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCGGAAGAAATCAGCGCTATGGTGTT 579779 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||| ||||| |||| ||| |||| | | || || |||| ||| || ||||| Sbjct 579780 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAAT 579839 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || ||||||||||| || || || ||||| || || ||||| |||||| || Sbjct 579840 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 579899 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||| | |||||| | || |||||||| ||||| || || |||||| |||| ||||| Sbjct 579900 TTCTGGTTTGAATGTTTTGCGAATTATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 579959 Query 550528 ACTTGATA 550535 |||||||| Sbjct 579960 ACTTGATA 579967 >seq99 Length=156952 Score = 145 bits (160), Expect = 6e-29 Identities = 327/485 (67%), Gaps = 11/485 (2%) Strand=Plus/Plus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 ||||||| |||| | |||||| ||||||||||||||||||||||| || || | | Sbjct 105272 GTGTTGGAGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGTA 105331 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 ||| || || ||||| |||| || |||| ||| | | | | || ||| | || | Sbjct 105332 TTACCCCGTCGTATGTGGCTTTTACACCGGAAGGTGAGCGTCTGATCGGCGATTCCGCGA 105391 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || |||| || |||||| ||||| | || |||||||| ||| | |||| Sbjct 105392 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGTC 105451 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 || | || || | |||| || ||| || ||||| || | | ||||| Sbjct 105452 GAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCGTTT-ACAGTGTTA 105510 Query 550263 -ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATT-TTC 550320 | || | ||||| | || || ||| | | || || || |||| ||| Sbjct 105511 GAAAAATCAAGCAAACCGAACGTTCAACTCACTGTTAACGG---TGAAAAGAAATTGTTC 105567 Query 550321 AC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTT 550378 || | ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | Sbjct 105568 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTAT 105627 Query 550379 GTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 | || ||||||| | |||| || | || || || || ||||| || || ||||| Sbjct 105628 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAA 105687 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 ||||||||||| |||||||| || |||||||| |||||||| |||| || |||||| Sbjct 105688 CGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTAGTTCGAATCATCAAT 105747 Query 550499 GAACC 550503 ||||| Sbjct 105748 GAACC 105752 Score = 104 bits (114), Expect = 2e-16 Identities = 256/386 (66%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 || ||||||| || || ||||||||||| ||||| || | ||||| | | |||||| Sbjct 106506 GTATTAATCCTGACGAAGCTGTTGCCTACGGTGCTGCGGTACAAGCTGGCGTAATTTCTG 106565 Query 552265 GACAAACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 | ||| ||| | ||| | | |||| || | ||||| | ||| | || | Sbjct 106566 G------TGAAGAAGATACTGGTGA-TCTTGTGCTGTTGGATGTCAATCCGTTGACTTTG 106618 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 || | ||||| ||||| || | ||||| || || || || ||||| | || Sbjct 106619 GGAATTGAAACTGTTGGCGGAGTGATGACGAAACTGATTCCCAGGAATACGGTAGTGCCG 106678 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 || ||||| | |||| || | | || ||||| | | ||||| |||||| Sbjct 106679 ACCAAGAAATCGCAGATATTCAGCACCGCTGCCGACAATCAGCCCACGGTTACTATTCAA 106738 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 |||| ||||| ||| || | | || ||||| ||| | | ||||| | || || | Sbjct 106739 GTTTTCGAAGGCGAACGACCAATGACAAAAGACAATCACCTTCTTGGCAAGTTCGATCTT 106798 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 || || ||||| |||||||| || || || ||||||||||| || |||||||| ||| Sbjct 106799 ACTGGCATACCTCCGGCTCCTCGCGGTGTGCCACAAATTGAAGTCACATTCGATATTGAT 106858 Query 552564 GCCAATGGAATTTTGAATGTGACTGC 552589 | ||||| |||||| | || || || Sbjct 106859 GTGAATGGCATTTTGCACGTCACCGC 106884 >seq6644 Length=275 Score = 109 bits (120), Expect = 4e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || ||||||||||| | | |||||||| || |||||||| |||||||| || ||||| Sbjct 100 TTACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 159 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || | || ||| | ||| | ||||| ||||| Sbjct 160 CCTTTTACATTCTCTATTGTATCAG-ATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 218 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| || ||||||||||||||||| Sbjct 219 AAGCGTCTTAACGAAAATTTGCAT 242 >seq389 Length=4972 Score = 104 bits (114), Expect = 2e-16 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||||||||| || |||||||| ||||||||||||||||| Sbjct 4474 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 4533 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 ||| || ||| ||||| || | || | || ||| | ||| | ||||| ||||| Sbjct 4534 CCTTTCACATTCTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 4592 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| |||||||||||||| ||||| Sbjct 4593 AAGCGTTTTAACGAAAATCTGCAT 4616 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || |||||||| ||||||||||||||||| | Sbjct 3622 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 3681 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || || ||||| |||| || || ||| | ||| | ||||| ||||| || Sbjct 3682 TTCACATTTTCTATTGTGTCAGATGGTTCGAC-TTCCAAAGTGATGGTTTTGCCAGTGAG 3740 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 3741 GGTCTTAACGAAAATTTGCAT 3761 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || | | ||| ||||| || |||||||| ||||||||||||||||| | Sbjct 3906 CCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 3965 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| ||||| || | || | || ||| | ||| | ||||| || || || Sbjct 3966 TTTACATTCTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTGAG 4024 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 4025 GGTCTTAACAAAAATTTGCAT 4045 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || |||||||||||||||||||| ||||| | Sbjct 4194 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 4253 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| || ||||| || | || || ||| | ||| | ||||| ||||| || Sbjct 4254 TTTACATTTTCTATTGTGTCTGATGGTTCGAC-TTCCAAAGTGATGGTTTTGCCAGTGAG 4312 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 4313 GGTCTTAACGAAAATTTGCAT 4333 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||| ||||| || |||||||| ||||||||||||||||| Sbjct 4761 CCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCC 4820 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||||| || | || | || ||| | ||| | ||||| ||||| || Sbjct 4821 TTCACATTTTCAATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 4879 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 4880 GGTCTTAACAAAAATTTGCAT 4900 >seq176 Length=85284 Score = 104 bits (114), Expect = 2e-16 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711 ||| ||||| |||||||| |||||||| || || | || |||||||||||||||| Sbjct 77509 TGCCACTGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 77450 Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770 | |||||||| |||||||| ||| || |||||| | ||| ||| | ||| | | | Sbjct 77449 CAAGAACAAAAGCCCTGATGCAGAAAGCAAATTTAAAGAGATT-GCAGAAGCATACGATG 77391 Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 |||| |||| || |||||||| ||| || |||| ||||||| Sbjct 77390 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 77347 >seq51 Length=255661 Score = 104 bits (114), Expect = 2e-16 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||||||||| || |||||||| ||||||||||||||||| Sbjct 499 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 440 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 ||| || ||| ||||| || | || | || ||| | ||| | ||||| ||||| Sbjct 439 CCTTTCACATTCTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 381 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| |||||||||||||| ||||| Sbjct 380 AAGCGTTTTAACGAAAATCTGCAT 357 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||| ||||| || |||||||| ||||||||||||||||| Sbjct 212 CCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCC 153 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||||| || | || | || ||| | ||| | ||||| ||||| || Sbjct 152 TTCACATTTTCAATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 94 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 93 GGTCTTAACAAAAATTTGCAT 73 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || |||||||||||||||||||| ||||| | Sbjct 779 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 720 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| || ||||| || | || || ||| | ||| | ||||| ||||| || Sbjct 719 TTTACATTTTCTATTGTGTCTGATGGTTCGAC-TTCCAAAGTGATGGTTTTGCCAGTGAG 661 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 660 GGTCTTAACGAAAATTTGCAT 640 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || | | ||| ||||| || |||||||| ||||||||||||||||| | Sbjct 1067 CCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 1008 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| ||||| || | || | || ||| | ||| | ||||| || || || Sbjct 1007 TTTACATTCTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTGAG 949 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 948 GGTCTTAACAAAAATTTGCAT 928 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || |||||||| ||||||||||||||||| | Sbjct 1351 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 1292 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || || ||||| |||| || || ||| | ||| | ||||| ||||| || Sbjct 1291 TTCACATTTTCTATTGTGTCAGATGGTTCGAC-TTCCAAAGTGATGGTTTTGCCAGTGAG 1233 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 1232 GGTCTTAACGAAAATTTGCAT 1212 >seq104 Length=152162 Score = 100 bits (110), Expect = 2e-15 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | ||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 21331 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 21390 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449 ||| || ||||| || || || || || ||| || || | |||||| |||| Sbjct 21391 CTTTTGACATTTTCAATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 21448 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 ||||||| || ||||| || |||||| Sbjct 21449 TAAGAGTCTTCACGAATATCTGCATA 21474 Score = 98.7 bits (108), Expect = 8e-15 Identities = 109/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || |||||||||||||||||||||||||| | Sbjct 4003 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 4062 Query 563395 TTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAA 563452 ||||| ||| ||||| || || || | || ||| | ||| | ||||| || || | Sbjct 4063 TTTACATTCTCTATTGTGTCGGAGGGTTCG-AC-TTCCAAAGTGATGGTTTTGCCGGTGA 4120 Query 563453 GAGTTTTAACGAAAATTTGCAT 563474 | || ||||||||||||||||| Sbjct 4121 GGGTCTTAACGAAAATTTGCAT 4142 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | |||||||| || |||||||| |||||||| || ||||| | Sbjct 3718 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTCCCT 3777 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || | || ||| | ||| | ||||| |||||||| Sbjct 3778 TTTACATTCTCTATTGTATCAGA-TGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAG 3836 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 3837 CGTCTTAACAAAAATTTGCAT 3857 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | || |||||||||||||||||| ||||| |||||||||||||| Sbjct 20325 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTA 20384 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || ||||| ||||||| || ||| ||| | || | ||||| ||||| Sbjct 20385 CCCTTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 20443 Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || ||||| |||||| Sbjct 20444 TAATGTTTTCACAAAAATCTGCATA 20468 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | || |||||||||||||||||| ||||| |||||||||||||| Sbjct 20612 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20671 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || ||||| ||||||| || ||| ||| | || | ||||| ||||| Sbjct 20672 CCCTTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 20730 Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || ||||| |||||| Sbjct 20731 TAATGTTTTCACAAAAATCTGCATA 20755 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | || |||||||||||||||||| ||||| |||||||||||||| Sbjct 20899 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20958 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || ||||| ||||||| || ||| ||| | || | ||||| ||||| Sbjct 20959 CCCTTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 21017 Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || ||||| |||||| Sbjct 21018 TAATGTTTTCACAAAAATCTGCATA 21042 >seq3104 Length=412 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||||||||| | | |||||||| || |||||||| |||||||| || ||||| | Sbjct 205 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 264 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || | || ||| | ||| | ||||| ||||| || Sbjct 265 TTTACATTCTCTATTGTATCAG-ATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 323 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || |||||||| |||||||| Sbjct 324 GGTCTTAACGAATATTTGCAT 344 >seq1633 Length=565 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||||||||| | | |||||||| || |||||||| |||||||| || ||||| | Sbjct 361 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || | || ||| | ||| | ||||| ||||| || Sbjct 301 TTTACATTCTCTATTGTATCAG-ATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 243 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || |||||||| |||||||| Sbjct 242 GGTCTTAACGAATATTTGCAT 222 >seq308 Length=9352 Score = 98.7 bits (108), Expect = 8e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 563328 TTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAAT 563387 ||| || |||||||| || | | ||| ||||| || |||||||| |||||||||||||| Sbjct 191 TTGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAAT 250 Query 563388 TTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTAC 563446 ||| |||||| || ||||| || | || | || ||| | ||| | ||||| | Sbjct 251 TTTGCCTTTTACATTTTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTGC 309 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||||||||||||||| Sbjct 310 CAGTGAGGGTCTTAACGAAAATTTGCAT 337 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | |||||||| || |||||||| |||||||| || ||||| | Sbjct 8992 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 9051 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || | || ||| | ||| | ||||| |||||||| Sbjct 9052 TTTACATTCTCTATTGTATCAGA-TGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAG 9110 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 9111 CGTCTTAACGAAAATTTGCAT 9131 >seq271 Length=23410 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | |||||||| || |||||||| |||||||| || ||||| | Sbjct 361 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || | || ||| | ||| | ||||| |||||||| Sbjct 301 TTTACATTCTCTATTGTATCAGA-TGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAG 243 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 242 CGTCTTAACGAAAATTTGCAT 222 >seq127 Length=124226 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599 ||||| |||| ||||||| || | |||||||| |||||||| | || | | |||| Sbjct 68719 GAACGACTTGGTCGATGGATAGATTTTAAAAATGATTATAAAACTTTATATCCAAGTTTC 68778 Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659 ||||||||||| |||| ||| ||||| | || | ||| | | | |||| Sbjct 68779 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 68838 Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719 ||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | | Sbjct 68839 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGAACTCCATTGTCAAATTTTGAATCTGGA 68898 Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745 |||||||| |||||| ||||||| Sbjct 68899 CAAAATTACAAAGAAGTCATTGATCC 68924 >seq4475 Length=347 Score = 91.5 bits (100), Expect = 1e-12 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 563362 GGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGA 563421 || |||||||| |||||||| || ||||| |||||| ||| |||||||||| || Sbjct 347 GGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGA-TGG 289 Query 563422 GTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||| | ||| | ||||| ||||||||||| ||||||||||||||||| Sbjct 288 TTCCACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTCTTAACGAAAATTTGCAT 235 >seq10 Length=507062 Score = 86.0 bits (94), Expect = 5e-11 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 550344 TTTTAATGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 |||| |||||||||||| ||||||| || | || | |||| || |||| | ||||| Sbjct 250324 TTTTGATGAAAATGAAAGAAACAGCTGAGAG-TTATCTTGGACAGAAAGTCAGCAATGCA 250266 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCA 550443 || || || |||||||| ||||||||||| ||||||||||| Sbjct 250265 GTGATTACAGTACCAGCGTATTTTAATGATTCACAACGTCA 250225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028722784796110