Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq308 87.8 1e-12 seq22 84.2 2e-11 seq104 82.4 6e-11 >seq308 Length=9352 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||| Sbjct 827 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 886 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 |||||| | | | ||||||| ||| || || | |||||||||||||| |||| Sbjct 887 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 946 Query 48745 AAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 947 ACGTCTTCACAAATATCTGCATC 969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| ||||| || || ||||||||||| | |||| ||||| || || ||| || Sbjct 1166 CTTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATCCCCTCTTTATCCTGAATTTT 1225 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||||||| | | || ||||| | ||||| |||| ||||| ||||| || || Sbjct 1226 ACCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 1285 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | |||||| ||||| |||||||| Sbjct 1286 GAGAGTTTTCACAAATATCTGCAT 1309 >seq22 Length=390722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 |||| |||||||||| | ||||||||| | || || |||||| || ||| ||| Sbjct 92531 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGGAAATCTTGGTC 92590 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 | | |||||| | | ||||| || || ||||||||||| | || | ||| || || Sbjct 92591 GCCAAAATTGAATACAATTACTCCAACATTGCCCCTGTAATCTGCGTCTACCACGCCCGC 92650 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254 || | |||||| |||||| | || | ||||| || || || || ||||| ||||| Sbjct 92651 GCCGATGTCGATTCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATACGACCATAGCA 92710 Query 9255 TCCCACCGG 9263 || || || Sbjct 92711 GCCGACAGG 92719 >seq104 Length=152162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||| Sbjct 4629 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 4688 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 |||||| | | | ||||| | ||| || || | |||||||||||||| |||| Sbjct 4689 TTTTTACGTTCTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 4748 Query 48745 AAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 4749 ACGTCTTCACAAATATCTGCATC 4771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380887278023997