Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3 315 9e-81 seq7731 185 1e-41 seq99 138 1e-27 seq104 129 8e-25 seq308 125 9e-24 seq389 122 1e-22 seq51 122 1e-22 seq74 100 4e-16 >seq3 Length=883620 Score = 315 bits (348), Expect = 9e-81 Identities = 556/807 (69%), Gaps = 5/807 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 579424 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 579483 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || ||||| || ||| || ||||| || || Sbjct 579484 GTTGAAATTATTGCAAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 579543 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| ||||| || |||| ||||| ||||| |||||| || |||| ||| ||| Sbjct 579544 GATACCGAACGACTGATTGGCGATGCGGCAAAGAATCAGGTTGCGTTGAATCCTCATAAT 579603 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| ||||| ||||| ||| ||| || || Sbjct 579604 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATTTGATGATGCTGCTGTGCAGTCT 579663 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || || | ||| | | | ||||| | | || | || |||| ||| | Sbjct 579664 GACATGAAACATTGGCCATTTAAAGTTATCAATGATGGAACG---AAACCTAAAATTCAA 579720 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || |||| | || ||| ||| |||| | || |||||||| |||||||||| Sbjct 579721 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCGGAAGAAATCAGCGCTATGGTGTTA 579780 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | ||||||||||| ||||| ||| ||| |||| |||||||| || || || || | Sbjct 579781 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAATT 579840 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || || || | ||||| || || |||||||| || ||||||| | ||| Sbjct 579841 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 579900 Query 195779 GCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 | ||| | || ||| || |||||||||| ||||||||||||||||||||||||||||| Sbjct 579901 TCTGGTTTGAA-TGTTTTGCGAATTATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 579959 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 || || | || | || || |||||| |||| ||||| || ||||||||||| Sbjct 579960 ACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTAC 580019 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 ||||||||| || || | | || || | ||| || || || || ||| |||| ||||| Sbjct 580020 GTTTGATGTGTCTATTTTGACCATCGAGGATGGCATTTTTGAGGTCAAGTCTACCGCTGG 580079 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGA 196017 ||| ||||| | |||||||| || ||||| || | | |||||| | ||| Sbjct 580080 TGACACTCACTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTAGCTGA 580139 Query 196018 GTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAG 196077 ||| |||||||| ||||| || || || ||||| | || | ||||| | | Sbjct 580140 GTTTAAGCGAAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 580199 Query 196078 GACTGCATGTGAACGTGCCAAACGAAC 196104 || || |||||||| || ||||| || Sbjct 580200 CACAGCTTGTGAACGAGCGAAACGCAC 580226 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 196448 GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGT 196507 || |||||||| ||||| |||||||| |||| | || ||||| ||||||| || || Sbjct 580714 GTTCAAGATCTGCTGCTTCTTGATGTAACACCTCTTTCGTTGGGTATTGAAACCGCAGGG 580773 Query 196508 GGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGA--ACAAG 196565 |||||||||||| | | ||| | | ||||| || || || || | ||| | |||| Sbjct 580774 GGTGTTATGACTGCACTGATTAAACGCAACACTACCATCCCTAC--AAAAGTATCGCAAG 580831 Query 196566 TCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAAC 196625 | || | || || || || ||||| || || || |||||||| || |||||||| | Sbjct 580832 TGTTCACTACTTACTCGGACAATCAGCCTGGAGTATTAATTCAAGTGTACGAAGGAGAGC 580891 Query 196626 G 196626 | Sbjct 580892 G 580892 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/228 (68%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 ||||||| ||||| ||||| || || ||| |||| || | ||||||||||| ||| | Sbjct 580988 CTTGGAAAGTTCGAGTTGACCGGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAA 581047 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 ||| || || || || || || || ||| | ||||| | || | ||||| | || Sbjct 581048 GTTACGTTTGACATTGATGCCAACGGCATTTTGAACGTTTCTGCCGTTGACAAAAGTACT 581107 Query 196772 GG----CAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGA 196827 || |||| | || || ||||| |||||||| || || ||| || ||||| Sbjct 581108 GGTCGTCAAA----ACAAAATCACCATTACTAATGACAAAGGTCGACTTAGCAAAGAGGA 581163 Query 196828 AATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||||| |||||||| | ||| || || | |||| | ||||| || Sbjct 581164 CATTGATCGTATGGTCCGAGAAGCAGATCAATACAAACAGGAAGATGA 581211 >seq7731 Length=250 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| |||||||| || |||||||| || || || |||||||| ||||| ||| | Sbjct 250 GTATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCT 191 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| || || ||| |||| || ||||| || || ||||| || || ||||| || | Sbjct 190 CTGACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACC 131 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| | ||||| ||||| || || ||||| || ||||| |||||||| || || |||| Sbjct 130 AGCAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACA 71 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | | || ||||||||||| || |||||||| || | ||||| |||||| Sbjct 70 ATATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTTCGTGGTGGT 21 >seq99 Length=156952 Score = 138 bits (152), Expect = 1e-27 Identities = 325/485 (67%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| |||||| || ||||| | ||||| || || || |||| Sbjct 105272 GTGTTGGAGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGTA 105331 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || ||||| || || |||||| || ||| ||||| | || ||| |||| | Sbjct 105332 TTACCCCGTCGTATGTGGCTTTTACACCGGAAGGTGAGCGTCTGATCGGCGATTCCGCGA 105391 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || || || |||||| | |||||| Sbjct 105392 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGTC 105451 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | ||||| |||| | |||| ||| || ||| | | | ||| ||| Sbjct 105452 GAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCGTTTACAGT-GTTA 105510 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | || || | || | | || ||||||| |||||| || Sbjct 105511 GAAAAAT--CAAGCAAACCGAACGTTCAACTCACTGTTAACGGTGAAAAGAAATTGTTCA 105568 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| | ||||| ||| | || ||||| || | ||| ||| ||| Sbjct 105569 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATT 105628 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || |||||||| |||| ||| |||||| Sbjct 105629 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAAC 105688 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAAT 195808 | || || || || || || | | ||||| ||||| || ||| || |||| |||||| Sbjct 105689 GTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAA-TGTAGTTCGAATCATCAAT 105747 Query 195809 GAACC 195813 ||||| Sbjct 105748 GAACC 105752 Score = 96.9 bits (106), Expect = 5e-15 Identities = 329/506 (65%), Gaps = 10/506 (2%) Strand=Plus/Plus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 || || || || ||||| ||||| || ||||| || || || |||| | | || ||| Sbjct 106508 ATTAATCCTGACGAAGCTGTTGCCTACGGTGCTGCGGTACAAGCTGGCGTAATTTCTGGT 106567 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || ||| | || |||||| |||| | ||||| || | | |||| Sbjct 106568 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGATGTCAATCCGTTGACTTTGGGA 106621 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 ||||||| | || || || ||||| ||| | ||| ||||| || | ||||| Sbjct 106622 ATTGAAACTGTTGGCGGAGTGATGACGAAACTGATTCCCAGGAATACGGTAGTGCCGACC 106681 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 ||||| || | || || | |||| ||||| || ||| ||||||||| Sbjct 106682 AAGAAATCGCAGATATTCAGCACCGCTGCCGACAATCAGCCCACGGTTACTATTCAAGTT 106741 Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 | ||||| ||||| || || |||| || || || || ||||| | |||||| | || Sbjct 106742 TTCGAAGGCGAACGA-CCAATGACAAAAGACAATCACCTTCTTGGCAAGTTCGATCTTAC 106800 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || || | ||||| ||||| ||| | || |||||||| || | Sbjct 106801 TGGCATACCTCCGGCTCCTCGCGGTGTGCCACAAATTGAAGTCACATTCGATATTGATGT 106860 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA-AAGATTG 196790 ||||| ||| | ||||||| || || ||||| | | || ||| ||| ||||| Sbjct 106861 GAATGGCATTTTGCACGTCACCGCCGAAGACAAAGGCACCGG-AAACAAGAACAAGATCA 106919 Query 196791 TGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATG 196850 |||||||||||| | || || || ||| || ||||| || ||| | | |||| Sbjct 106920 CAATTACCAATGACCACAACCGTCTGTCACCGGAAGATATTGACCGCATGATCAACGATG 106979 Query 196851 CGGAAAAGTACAGGGAAGAAGACGAG 196876 | || || || |||||| ||| || Sbjct 106980 CCGAGAAATATGCGGAAGAGGACAAG 107005 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/160 (72%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||||||||| |||||||||||||| || ||| ||| |||||| | || Sbjct 105815 AACTGCTGCTGCAATTGCATATGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 105871 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || ||||| ||||| || || | | || | |||||| |||| | Sbjct 105872 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGATAATGGTGT 105931 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 || ||||| ||||| ||||||||||||| | ||| Sbjct 105932 TTTTGAAGTGCTCTCTACTAATGGTGATACTCATTTGGGT 105971 >seq104 Length=152162 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 21474 TATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 21415 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| || || || ||||| || ||||| ||||||||||||||||| || ||||| Sbjct 21414 AGACACCATTGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 21355 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 21354 GCAAAGATTAATCTTTGCAGGTAA 21331 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 20756 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 20697 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | || | || ||||||||||||||||||||||| || |||| Sbjct 20696 CTGATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATC 20637 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 20636 AGCAACGATTGATATTTGCTGGTAA 20612 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 21043 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 20984 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | || | || ||||||||||||||||||||||| || |||| Sbjct 20983 CTGATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATC 20924 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 20923 AGCAACGATTGATATTTGCTGGTAA 20899 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | ||| Sbjct 5111 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 5052 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| || ||||| ||||| || || ||||||||||||||| Sbjct 5051 GACACAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAG 4992 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || || || ||||||||||| Sbjct 4991 CAGCGTCTGATCTTTGCTGGTAA 4969 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || |||||||| || || || || |||||| | ||| Sbjct 4770 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 4711 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || ||| | ||| ||||||||||| || |||||||| || || ||||| Sbjct 4710 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 4651 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 4650 CAGCGGCTTATTTTTGCTGGTA 4629 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 20469 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 20410 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | || | || ||||||||||||||||| ||||| || |||| Sbjct 20409 CTGATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATC 20350 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 20349 AGCAACGATTGATATTTGCTGGTAA 20325 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| || || ||||| ||||| | || || || | || Sbjct 4142 ATGCAAATTTTCGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTCGAACCCTCC 4083 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 4082 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 4023 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 4022 CAACGTTTGATATTTGCTGGTA 4001 >seq308 Length=9352 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || |||||||| || || || || |||||| ||||| Sbjct 968 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 909 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || ||| | ||| ||||||||||| || |||||||| || || ||||| Sbjct 908 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 849 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 848 CAGCGGCTTATTTTTGCTGGTA 827 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | ||| Sbjct 1309 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 1250 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| |||| || || | |||| || ||||| ||||| || || |||||||||||||| Sbjct 1249 GACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCCGATCAA 1190 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || || |||||||| ||||| Sbjct 1189 CAGCGTCTCATTTTTGCAGGTAA 1167 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 337 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 278 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 277 GACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 218 Query 171982 CAACGACTTATTTTTGCTGGTAAACA 172007 ||||| | || ||||| ||||| || Sbjct 217 CAACGTTTGATATTTGCCGGTAAGCA 192 >seq389 Length=4972 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | ||| Sbjct 4333 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA 4274 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| || |||||||| ||||| |||||||| |||||| Sbjct 4273 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 4214 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 4213 CAACGTTTGATATTTGCTGGTA 4192 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || ||||| |||||||| ||||| ||||| | || || || | || Sbjct 4616 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 4557 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| || ||||||||||| || || |||||||| |||||| Sbjct 4556 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 4497 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 4496 CAACGTTTGATTTTTGCTGGTAA 4474 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 3761 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCT 3702 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| || || |||||||| |||||| Sbjct 3701 GACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 3642 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 3641 CAACGTTTGATATTTGCTGGTA 3620 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 4900 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 4841 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||||||||| || || |||||||| ||||| Sbjct 4840 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 4781 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 4780 CAACGTCTCATTTTTGCTGGTA 4759 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| || || ||||| ||||| | || || || | || Sbjct 4045 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATCC 3986 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 3985 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 3926 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || ||||| |||| Sbjct 3925 CAACGTTTGATATTTGCCGGTA 3904 >seq51 Length=255661 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | ||| Sbjct 640 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA 699 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| || |||||||| ||||| |||||||| |||||| Sbjct 700 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 759 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 760 CAACGTTTGATATTTGCTGGTA 781 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || ||||| |||||||| ||||| ||||| | || || || | || Sbjct 357 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 416 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| || ||||||||||| || || |||||||| |||||| Sbjct 417 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 476 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 477 CAACGTTTGATTTTTGCTGGTAA 499 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 73 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 132 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||||||||| || || |||||||| ||||| Sbjct 133 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 192 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 193 CAACGTCTCATTTTTGCTGGTA 214 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 1212 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCT 1271 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| || || |||||||| |||||| Sbjct 1272 GACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 1331 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 1332 CAACGTTTGATATTTGCTGGTA 1353 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| || || ||||| ||||| | || || || | || Sbjct 928 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATCC 987 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 988 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 1047 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || ||||| |||| Sbjct 1048 CAACGTTTGATATTTGCCGGTA 1069 >seq74 Length=189204 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| ||||| |||||| | ||||||||||| |||||||||||||||||||| Sbjct 117035 AGGGATTCCACCTGATCAACAACGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 116976 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | || |||||||| |||| ||||| Sbjct 116975 TACTTTGGCCGATTACAATATTCAGAAAGG 116946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657773267868080