Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq104 118 2e-21 seq308 113 8e-20 seq6644 105 1e-17 seq3104 105 1e-17 seq1633 105 1e-17 seq389 105 1e-17 seq51 105 1e-17 seq74 89.7 9e-13 >seq104 Length=152162 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| |||||||| || ||||||||||| || ||||| ||||| || ||||| Sbjct 21331 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 21390 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 |||| | |||| ||| || || || | ||||||||||| ||||||||||| || || Sbjct 21391 CTTTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 21450 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| ||||| Sbjct 21451 AGAGTCTTCACGAATATCTGCAT 21473 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| || |||| || ||||||||||| || ||||| |||||||| ||||| Sbjct 20325 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTA 20384 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 || | |||| ||| ||||| || | ||| ||||| | || || ||||| || ||| Sbjct 20385 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20444 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 | ||||| ||||| || ||||| Sbjct 20445 AATGTTTTCACAAAAATCTGCAT 20467 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| || |||| || ||||||||||| || ||||| |||||||| ||||| Sbjct 20612 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20671 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 || | |||| ||| ||||| || | ||| ||||| | || || ||||| || ||| Sbjct 20672 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20731 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 | ||||| ||||| || ||||| Sbjct 20732 AATGTTTTCACAAAAATCTGCAT 20754 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| || |||| || ||||||||||| || ||||| |||||||| ||||| Sbjct 20899 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20958 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 || | |||| ||| ||||| || | ||| ||||| | || || ||||| || ||| Sbjct 20959 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 21018 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 | ||||| ||||| || ||||| Sbjct 21019 AATGTTTTCACAAAAATCTGCAT 21041 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || || | || ||||| || || ||||||||||||||||| |||||| | Sbjct 4003 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 4062 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || || ||||| | || ||||| | ||| || ||||| || || || Sbjct 4063 TTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGAGG 4122 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || || ||||||||| Sbjct 4123 GTCTTAACGAAAATTTGCATT 4143 >seq308 Length=9352 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | ||||||||| ||||| || |||||||| ||||| || || || Sbjct 829 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 888 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| || ||| ||||| || | |||||||||||| || || ||||| ||||| | | Sbjct 889 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 948 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || |||||||| ||||| Sbjct 949 GTCTTCACAAATATCTGCAT 968 Score = 111 bits (122), Expect = 3e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||| || |||||||| || || | |||||||| || || ||||| ||||||||||| Sbjct 188 TAATTGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 247 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 |||||| ||||| |||| || || ||||| | || ||||| | ||| || ||||| Sbjct 248 AATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 307 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || ||||||||| Sbjct 308 GCCAGTGAGGGTCTTAACGAAAATTTGCATT 338 >seq6644 Length=275 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || ||||||||||| || | ||| ||||| || || ||||| |||||||| ||||||||| Sbjct 100 TTACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 159 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 ||||| ||| || ||||| || | || ||||| | ||| || ||||| || || Sbjct 160 CCTTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 219 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || |||||||| Sbjct 220 AGCGTCTTAACGAAAATTTGCAT 242 >seq3104 Length=412 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| || | ||| ||||| || || ||||| |||||||| ||||||||| | Sbjct 205 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 264 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | ||| || ||||| || || || Sbjct 265 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 324 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || |||||||||||| Sbjct 325 GTCTTAACGAATATTTGCATT 345 >seq1633 Length=565 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| || | ||| ||||| || || ||||| |||||||| ||||||||| | Sbjct 361 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | ||| || ||||| || || || Sbjct 301 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 242 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || |||||||||||| Sbjct 241 GTCTTAACGAATATTTGCATT 221 >seq389 Length=4972 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||| | |||||||| || || | |||||||| || || ||||| ||||||||||| Sbjct 3896 TAATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 3955 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 |||||| ||||| ||| || || ||||| | || ||||| | ||| || ||||| Sbjct 3956 AATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 4015 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| ||||||||| Sbjct 4016 GCCGGTGAGGGTCTTAACAAAAATTTGCATT 4046 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || || | || ||||| || || |||||||||||||||||||||||| | Sbjct 4194 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 4253 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| || || || || | || ||||| | ||| || ||||| || || || Sbjct 4254 TTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 4313 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || || ||||||||| Sbjct 4314 GTCTTAACGAAAATTTGCATT 4334 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | |||||||| || || ||||| ||||||||||| ||||| Sbjct 4761 CCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCC 4820 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || ||||| | || ||||| | ||| || ||||| || || || Sbjct 4821 TTCACATTTTCAATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 4880 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || ||||| |||||||| Sbjct 4881 GTCTTAACAAAAATTTGCAT 4900 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || |||||||| || | || ||||| || || ||||| ||||||||||| ||||| Sbjct 4474 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 4533 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 ||| | ||| || || ||||| | || ||||| | ||| || ||||| || || Sbjct 4534 CCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 4593 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || ||||| Sbjct 4594 AGCGTTTTAACGAAAATCTGCAT 4616 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || || | || ||||| || || ||||| ||||||||||| |||||| | Sbjct 3622 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 3681 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| || || || || | || ||||| | ||| || ||||| || || || Sbjct 3682 TTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 3741 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || || ||||||||| Sbjct 3742 GTCTTAACGAAAATTTGCATT 3762 >seq51 Length=255661 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||| | |||||||| || || | |||||||| || || ||||| ||||||||||| Sbjct 1077 TAATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG 1018 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 |||||| ||||| ||| || || ||||| | || ||||| | ||| || ||||| Sbjct 1017 AATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 958 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| ||||||||| Sbjct 957 GCCGGTGAGGGTCTTAACAAAAATTTGCATT 927 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || || | || ||||| || || |||||||||||||||||||||||| | Sbjct 779 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 720 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| || || || || | || ||||| | ||| || ||||| || || || Sbjct 719 TTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 660 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || || ||||||||| Sbjct 659 GTCTTAACGAAAATTTGCATT 639 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | |||||||| || || ||||| ||||||||||| ||||| Sbjct 212 CCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACCC 153 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || ||||| | || ||||| | ||| || ||||| || || || Sbjct 152 TTCACATTTTCAATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 93 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || ||||| |||||||| Sbjct 92 GTCTTAACAAAAATTTGCAT 73 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || |||||||| || | || ||||| || || ||||| ||||||||||| ||||| Sbjct 499 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 440 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 ||| | ||| || || ||||| | || ||||| | ||| || ||||| || || Sbjct 439 CCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 380 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || ||||| Sbjct 379 AGCGTTTTAACGAAAATCTGCAT 357 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || || | || ||||| || || ||||| ||||||||||| |||||| | Sbjct 1351 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 1292 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| || || || || | || ||||| | ||| || ||||| || || || Sbjct 1291 TTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 1232 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || || ||||||||| Sbjct 1231 GTCTTAACGAAAATTTGCATT 1211 >seq74 Length=189204 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 ||||| || ||||| ||||| | ||| | ||| ||| ||||| |||| || ||||| Sbjct 117082 CCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTGAATTGTATCAGAAGGTTCTACTTCC 117141 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| || |||||||| ||||| |||||||||||||| Sbjct 117142 AAAGTGATAGTCTTTCCTGTTAGTGTTTTCACAAATATTTGCAT 117185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899532508074480