Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq104 118 2e-21 seq308 107 3e-18 seq3104 91.5 2e-13 seq1633 91.5 2e-13 seq389 91.5 2e-13 seq51 91.5 2e-13 seq74 84.2 3e-11 >seq104 Length=152162 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 20754 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 20695 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| |||||| |||||||| |||||||| ||||| || || Sbjct 20694 GATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCAG 20635 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 20634 CAACGATTGATATTTGCTGGTAA 20612 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 21041 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 20982 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| |||||| |||||||| |||||||| ||||| || || Sbjct 20981 GATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCAG 20922 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 20921 CAACGATTGATATTTGCTGGTAA 20899 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 20467 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 20408 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| |||||| |||||||| ||||| || ||||| || || Sbjct 20407 GATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAG 20348 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 20347 CAACGATTGATATTTGCTGGTAA 20325 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || || | |||||||||||||| ||| ||||||| ||| || Sbjct 21473 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 21414 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || |||| |||||| || ||||| |||||||| ||||| || || Sbjct 21413 GACACCATTGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 21354 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 |||||||| || | ||| ||||| Sbjct 21353 CAAAGATTAATCTTTGCAGGTAA 21331 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| |||||||| |||||| | ||||| || || Sbjct 4770 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 4711 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| |||| ||| || ||||| ||||||||||| |||||||| ||| Sbjct 4710 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 4651 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | | |||| ||| |||| Sbjct 4650 CAGCGGCTTATTTTTGCTGGTA 4629 >seq308 Length=9352 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| |||||||| |||||| ||||||| || || Sbjct 968 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 909 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| |||| ||| || ||||| ||||||||||| |||||||| ||| Sbjct 908 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 849 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | | |||| ||| |||| Sbjct 848 CAGCGGCTTATTTTTGCTGGTA 827 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||| ||||| || || || ||||| ||| || Sbjct 338 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 279 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| || ||| ||||| ||||||||||| || || || ||||| || Sbjct 278 CGACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 219 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCA 155968 |||| | ||||| | |||||||||||| Sbjct 218 ACAACGTTTGATATTTGCCGGTAAGCA 192 >seq3104 Length=412 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| |||| || | ||||| ||||| || || || ||||| ||| || Sbjct 345 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 286 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| |||||||| |||||||| || || || ||||| || Sbjct 285 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 226 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 || | ||||||| |||||||| Sbjct 225 GCAGCGTTTGATTTTTGCCGGTA 203 >seq1633 Length=565 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| |||| || | ||||| ||||| || || || ||||| ||| || Sbjct 221 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 280 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| |||||||| |||||||| || || || ||||| || Sbjct 281 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 340 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 || | ||||||| |||||||| Sbjct 341 GCAGCGTTTGATTTTTGCCGGTA 363 >seq389 Length=4972 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||| ||||| || || || ||||||||| || Sbjct 3762 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 3703 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| |||||| ||||| ||||||||||| || || || ||||| || Sbjct 3702 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3643 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 3642 GCAACGTTTGATATTTGCTGGTA 3620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||| ||||| || || || ||||||||| || Sbjct 4334 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 4275 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| || ||| |||||||||||||||||||| || || ||||| || Sbjct 4274 AGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 4215 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 4214 GCAACGTTTGATATTTGCTGGTA 4192 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | ||||| ||||| || || || ||||| ||| || Sbjct 4616 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 4557 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| ||||||||||| || || || ||||| || Sbjct 4556 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 4497 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | ||||||| ||| |||||| || Sbjct 4496 CAACGTTTGATTTTTGCTGGTAAGTAG 4470 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || || ||||| ||| || Sbjct 4046 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 3987 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||||| ||||||||||| || || || ||||| || Sbjct 3986 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3927 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCA 155968 |||| | ||||| | |||||||| ||| Sbjct 3926 ACAACGTTTGATATTTGCCGGTATGCA 3900 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | ||||| ||||| || || || ||||| ||| || Sbjct 4900 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 4841 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| ||||| |||||| ||||||||||| || || || || || ||| Sbjct 4840 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 4781 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| | | |||| ||| |||| Sbjct 4780 CAACGTCTCATTTTTGCTGGTA 4759 >seq51 Length=255661 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||| ||||| || || || ||||||||| || Sbjct 639 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 698 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| || ||| |||||||||||||||||||| || || ||||| || Sbjct 699 AGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 758 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 759 GCAACGTTTGATATTTGCTGGTA 781 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||| ||||| || || || ||||||||| || Sbjct 1211 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 1270 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| |||||| ||||| ||||||||||| || || || ||||| || Sbjct 1271 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1330 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 1331 GCAACGTTTGATATTTGCTGGTA 1353 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | ||||| ||||| || || || ||||| ||| || Sbjct 357 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 416 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| ||||||||||| || || || ||||| || Sbjct 417 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 476 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | ||||||| ||| |||||| || Sbjct 477 CAACGTTTGATTTTTGCTGGTAAGTAG 503 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | ||||| ||||| || || || ||||| ||| || Sbjct 73 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 132 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| ||||| |||||| ||||||||||| || || || || || ||| Sbjct 133 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 192 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| | | |||| ||| |||| Sbjct 193 CAACGTCTCATTTTTGCTGGTA 214 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || || ||||| ||| || Sbjct 927 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 986 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||||| ||||||||||| || || || ||||| || Sbjct 987 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1046 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCA 155968 |||| | ||||| | |||||||| ||| Sbjct 1047 ACAACGTTTGATATTTGCCGGTATGCA 1073 >seq74 Length=189204 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | |||||| | || ||||| ||||| || || ||||| ||| |||| Sbjct 117185 ATGCAAATATTTGTGAAAACACTAACAGGAAAGACTATCACTTTGGAAGTAGAACCTTCT 117126 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 |||| ||| || |||||| |||||| ||||| || ||||| Sbjct 117125 GATACAATTCAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGG 117082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731772840492400