Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq104 132 9e-26 seq308 129 1e-24 seq389 114 3e-20 seq51 114 3e-20 >seq104 Length=152162 Score = 132 bits (146), Expect = 9e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| | | ||| ||||| ||||| ||||| |||||||| || |||||| Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||||| || | ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 5089 AGAGTTTTCACAAATATCTGCATTTT 5114 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||||||||| || |||||||| || || ||||| ||||| || |||||| Sbjct 21331 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 21390 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| ||||| || | ||||| | ||| |||||||| || || ||||| ||||| Sbjct 21391 CTTTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 21450 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | || || | ||||||||||| Sbjct 21451 AGAGTCTTCACGAATATCTGCAT 21473 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 20325 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTA 20384 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||| || | |||||||| | || || ||||| |||||| Sbjct 20385 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20444 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 |||||||| | ||| |||||||| Sbjct 20445 AATGTTTTCACAAAAATCTGCAT 20467 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 20612 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20671 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||| || | |||||||| | || || ||||| |||||| Sbjct 20672 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20731 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 |||||||| | ||| |||||||| Sbjct 20732 AATGTTTTCACAAAAATCTGCAT 20754 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 20899 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20958 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||| || | |||||||| | || || ||||| |||||| Sbjct 20959 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 21018 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 |||||||| | ||| |||||||| Sbjct 21019 AATGTTTTCACAAAAATCTGCAT 21041 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| || || || |||||||| ||||| || ||| Sbjct 4629 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 4688 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||| || || | |||||| | || ||||| || ||||| ||||| || || | Sbjct 4689 TTTTTACGTTCTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 4748 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | || || | |||||||||||| Sbjct 4749 ACGTCTTCACAAATATCTGCAT 4770 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || || | || ||||| ||||| ||||||||||||||||| ||||| Sbjct 4001 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 4060 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | || || | ||| ||||| | ||| |||||||| || || | Sbjct 4061 CTTTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGA 4120 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 4121 GGGTCTTAACGAAAATTTGCATT 4143 >seq308 Length=9352 Score = 129 bits (142), Expect = 1e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| ||||| || | | ||||||||| ||||| || || |||||||| || |||||| Sbjct 1167 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATCCCCTCTTTATCCTGAATTTTA 1226 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||||| || || ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 1227 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 1286 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 1287 AGAGTTTTCACAAATATCTGCATTTT 1312 Score = 113 bits (124), Expect = 9e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| || || || |||||||| ||||| || ||| Sbjct 827 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 886 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||| || || | |||||||| || |||||||| ||||| ||||| || || | Sbjct 887 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 946 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | || || | |||||||||||| Sbjct 947 ACGTCTTCACAAATATCTGCAT 968 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||| ||||| ||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 189 AATTGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGA 248 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||||||||| ||| | || || | ||| ||||| | ||| |||||||| Sbjct 249 ATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 308 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 309 CCAGTGAGGGTCTTAACGAAAATTTGCATT 338 >seq389 Length=4972 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || || | || ||||| ||||| ||||||||||||||||||||||| Sbjct 4192 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 4251 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||||| | ||| ||||| | ||| |||||||| ||||| | Sbjct 4252 CTTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 4311 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 4312 GGGTCTTAACGAAAATTTGCATT 4334 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 4474 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 4533 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| ||| | || || | ||| ||||| | ||| |||||||| ||||| Sbjct 4534 CCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 4593 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||||||| || |||||||| Sbjct 4594 AGCGTTTTAACGAAAATCTGCAT 4616 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||| |||| ||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 3897 AATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGA 3956 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||||||||| ||| | || || | ||| ||||| | ||| |||||||| Sbjct 3957 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 4016 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || |||| ||| || |||||| Sbjct 4017 CCGGTGAGGGTCTTAACAAAAATTTGCATT 4046 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || || | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 3620 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 3679 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| ||| | || || | ||| ||||| | ||| |||||||| ||||| | Sbjct 3680 CTTTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 3739 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 3740 GGGTCTTAACGAAAATTTGCATT 3762 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | |||||||| ||||| ||||| ||||||||||| |||||| Sbjct 4759 TACCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTAC 4818 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || ||||| || | || || | ||| ||||| | ||| |||||||| ||||| | Sbjct 4819 CCTTCACATTTTCAATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGA 4878 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 || |||| ||| || ||||| Sbjct 4879 GGGTCTTAACAAAAATTTGCAT 4900 >seq51 Length=255661 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || || | || ||||| ||||| ||||||||||||||||||||||| Sbjct 781 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 722 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||||| | ||| ||||| | ||| |||||||| ||||| | Sbjct 721 CTTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 662 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 661 GGGTCTTAACGAAAATTTGCATT 639 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 499 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 440 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| ||| | || || | ||| ||||| | ||| |||||||| ||||| Sbjct 439 CCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 380 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||||||| || |||||||| Sbjct 379 AGCGTTTTAACGAAAATCTGCAT 357 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||| |||| ||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 1076 AATTGCATACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGA 1017 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||||||||| ||| | || || | ||| ||||| | ||| |||||||| Sbjct 1016 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 957 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || |||| ||| || |||||| Sbjct 956 CCGGTGAGGGTCTTAACAAAAATTTGCATT 927 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || || | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 1353 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 1294 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| ||| | || || | ||| ||||| | ||| |||||||| ||||| | Sbjct 1293 CTTTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 1234 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 1233 GGGTCTTAACGAAAATTTGCATT 1211 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | |||||||| ||||| ||||| ||||||||||| |||||| Sbjct 214 TACCAGCAAAAATGAGACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTAC 155 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || ||||| || | || || | ||| ||||| | ||| |||||||| ||||| | Sbjct 154 CCTTCACATTTTCAATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGA 95 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 || |||| ||| || ||||| Sbjct 94 GGGTCTTAACAAAAATTTGCAT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984343280647650