Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq389 113 4e-20 seq51 113 4e-20 seq308 111 1e-19 seq104 109 5e-19 seq7731 84.2 2e-11 >seq389 Length=4972 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| ||||| || || | ||||| ||| | || Sbjct 4045 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATCC 3986 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | |||||| || || ||||| ||||| ||||| || || |||||| Sbjct 3985 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 3926 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| |||||||| Sbjct 3925 CAACGTTTGATATTTGCCGG 3906 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||||||||| || || ||||| || || | ||||| ||| | || Sbjct 4616 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 4557 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| || || ||||| ||||| ||||| || || ||||| Sbjct 4556 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 4497 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 4496 CAACGTTTGATTTTTGCTGGTAA 4474 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||| ||| | | Sbjct 4333 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA 4274 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| |||||| || || ||||| ||||||||||| || || ||||| Sbjct 4273 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 4214 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 4213 CAACGTTTGATATTTGCTGG 4194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||| ||| | | Sbjct 3761 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCT 3702 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || ||| || || ||||| ||||| ||||| || || ||||| Sbjct 3701 GACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 3642 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 3641 CAACGTTTGATATTTGCTGG 3622 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | || Sbjct 4900 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 4841 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || ||||| ||||| ||||| || || |||||| Sbjct 4840 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 4781 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | || ||||| || Sbjct 4780 CAACGTCTCATTTTTGCTGG 4761 >seq51 Length=255661 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| ||||| || || | ||||| ||| | || Sbjct 928 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATCC 987 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | |||||| || || ||||| ||||| ||||| || || |||||| Sbjct 988 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 1047 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| |||||||| Sbjct 1048 CAACGTTTGATATTTGCCGG 1067 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||||||||| || || ||||| || || | ||||| ||| | || Sbjct 357 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 416 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| || || ||||| ||||| ||||| || || ||||| Sbjct 417 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 476 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 477 CAACGTTTGATTTTTGCTGGTAA 499 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||| ||| | | Sbjct 640 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA 699 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| |||||| || || ||||| ||||||||||| || || ||||| Sbjct 700 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 759 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 760 CAACGTTTGATATTTGCTGG 779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||| ||| | | Sbjct 1212 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCT 1271 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || ||| || || ||||| ||||| ||||| || || ||||| Sbjct 1272 GACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 1331 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 1332 CAACGTTTGATATTTGCTGG 1351 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | || Sbjct 73 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 132 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || ||||| ||||| ||||| || || |||||| Sbjct 133 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 192 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | || ||||| || Sbjct 193 CAACGTCTCATTTTTGCTGG 212 >seq308 Length=9352 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||| ||| | || Sbjct 337 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 278 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| |||||| || || ||||| ||||| ||||| || || |||||| Sbjct 277 GACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 218 Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849 ||||||||||| |||||||| || || Sbjct 217 CAACGTTTGATATTTGCCGGTAAGCA 192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || | Sbjct 1309 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 1250 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | |||| |||||| || || || || ||||| || || || ||||||||| Sbjct 1249 GACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCCGATCAA 1190 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||| | || ||||| || || Sbjct 1189 CAGCGTCTCATTTTTGCAGGTAA 1167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||| | || || ||||| ||||| || ||||| || | | Sbjct 969 GATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTC 910 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || | |||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 909 AGATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCA 850 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || | || ||||| || Sbjct 849 ACAGCGGCTTATTTTTGCTGG 829 >seq104 Length=152162 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||| ||||| || || | ||||| ||| || || Sbjct 4142 ATGCAAATTTTCGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTCGAACCCTCC 4083 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | |||||| || || ||||| ||||||||||| || || ||||| Sbjct 4082 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 4023 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 4022 CAACGTTTGATATTTGCTGG 4003 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||| | || || ||||| ||||| || ||||| || |||| Sbjct 4771 GATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGA-GCCAT 4713 Query 24763 C-GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || ||| | || | |||||| ||||| |||||||||||||| || ||||| |||| Sbjct 4712 CAGATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATC 4653 Query 24822 AACAACGTTTGATCTTTGCCGG 24843 |||| || | || ||||| || Sbjct 4652 AACAGCGGCTTATTTTTGCTGG 4631 >seq7731 Length=250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 248 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCT 189 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 188 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 129 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || ||||| |||||| | | | | || |||| || || Sbjct 128 CAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAAT 69 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 68 ATCCAGAAGGAGTCTACCCTTCAC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449836644498920