Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq308 104 4e-17 seq104 98.7 2e-15 seq389 93.3 7e-14 seq51 93.3 7e-14 >seq308 Length=9352 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 1308 TGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 1249 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||||||| |||||| || |||||| || |||||||||||||||| Sbjct 1248 ACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCCGATCAAC 1189 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | | ||||||||||||||||| Sbjct 1188 AGCGTCTCATTTTTGCAGGTAA 1167 Score = 93.3 bits (102), Expect = 7e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||| || ||| | || || |||| || Sbjct 336 TGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCG 277 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 276 ACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAAC 217 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTA 146180 || | | || ||||| ||||| |||||| Sbjct 216 AACGTTTGATATTTGCCGGTAAGCAATTA 188 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || ||||||||||| ||||| | || || || | | Sbjct 967 TGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAG 908 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || ||||||| ||| || ||| ||||||||||| || || ||||||| Sbjct 907 ATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAAC 848 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 847 AGCGGCTTATTTTTGCTGGTA 827 >seq104 Length=152162 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 20753 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 20694 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || |||||| ||| ||| ||||||||||| || ||||| | Sbjct 20693 ATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCAGC 20634 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 20633 AACGATTGATATTTGCTGGTAA 20612 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 21040 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 20981 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || |||||| ||| ||| ||||||||||| || ||||| | Sbjct 20980 ATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCAGC 20921 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 20920 AACGATTGATATTTGCTGGTAA 20899 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| |||||| | || || | || |||||||| || || | || || |||| || | Sbjct 21472 TGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 21414 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 21413 GACACCATTGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 21354 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 21353 CAAAGATTAATCTTTGCAGGTAA 21331 Score = 96.9 bits (106), Expect = 5e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| ||||| | || || || ||||||||||| ||||| |||| || || | || | Sbjct 4769 TGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA- 4711 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | || ||||||| ||| || ||| ||||||||||| || || |||||| Sbjct 4710 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 4651 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 || | || |||||||| |||| Sbjct 4650 CAGCGGCTTATTTTTGCTGGTA 4629 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 20466 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 20407 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || |||||| ||| ||| ||||| ||||| || ||||| | Sbjct 20406 ATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAGC 20347 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 20346 AACGATTGATATTTGCTGGTAA 20325 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 5110 TGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 5051 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||||||| |||||| || |||||| || |||||||||||||| | Sbjct 5050 ACACAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAGC 4991 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | | || || ||||| ||||| Sbjct 4990 AGCGTCTGATCTTTGCTGGTAA 4969 >seq389 Length=4972 Score = 93.3 bits (102), Expect = 7e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || || ||||| || ||| | || || |||| || Sbjct 4899 TGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCG 4840 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| ||| |||||| || |||||||| ||||||| Sbjct 4839 ACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 4780 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTA 146180 || | ||||||||||| |||| ||||| Sbjct 4779 AACGTCTCATTTTTGCTGGTATTGAATTA 4751 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || || ||||| || ||| | || || |||| || | Sbjct 4332 TGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA- 4274 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||||||| ||||||||| ||||||||| |||||||| ||||| Sbjct 4273 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 4214 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 ||| | | || ||||| |||| Sbjct 4213 CAACGTTTGATATTTGCTGGTA 4192 >seq51 Length=255661 Score = 93.3 bits (102), Expect = 7e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || || ||||| || ||| | || || |||| || Sbjct 74 TGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCG 133 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| ||| |||||| || |||||||| ||||||| Sbjct 134 ACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 193 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTA 146180 || | ||||||||||| |||| ||||| Sbjct 194 AACGTCTCATTTTTGCTGGTATTGAATTA 222 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || || ||||| || ||| | || || |||| || | Sbjct 641 TGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA- 699 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||||||| ||||||||| ||||||||| |||||||| ||||| Sbjct 700 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 759 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 ||| | | || ||||| |||| Sbjct 760 CAACGTTTGATATTTGCTGGTA 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786059884279880