Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 345 3e-89 seq99 159 3e-33 seq117 107 1e-17 seq53 93.3 3e-13 >seq3 Length=883620 Score = 345 bits (382), Expect = 3e-89 Identities = 497/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 580123 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGA 580064 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 | | |||| ||||| || | | ||||| || |||||| || |||||||| | | Sbjct 580063 CCTCAAAAATGCCATCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGT 580004 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 580003 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 579944 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || |||||||| || ||||||| ||||||||| | ||||| ||| |||| || |||| Sbjct 579943 CCGCTGTTGGTTCGTTGATAATTCGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 579884 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || | || ||||||||||||||||| ||||||||||| ||||| || | | Sbjct 579883 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCGTCCTTAA 579824 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | |||||| | |||||| || |||| ||||| || ||| | ||| | | Sbjct 579823 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTGA 579764 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 ||| ||| || | | || ||| || || || ||| |||| || | ||||| Sbjct 579763 TTTCTTCCGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 579704 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 | ||| |||| ||||||||||||||||||| |||||| || || || ||| |||| Sbjct 579703 TTCCATCATTGATAACTTTAAATGGCCAATGTTTCATGTCAGACTGCACAGCAGCATCAT 579644 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 579643 CAAATCGACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 579584 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 | |||| || || ||||| |||||||| |||| || || || || | |||||| || Sbjct 579583 CCTGATTCTTTGCCGCATCGCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 579524 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 579523 GCGTGGTACGATTCCCTTGATCGTTTGCAATAATTTCAACTTTACCATGCTGGAACACGC 579464 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | |||||||| | || || || |||||||| ||||||||| Sbjct 579463 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 579423 Score = 127 bits (140), Expect = 2e-23 Identities = 199/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | || ||||| || |||||||| |||||||| | ||| || |||| ||| ||| Sbjct 580593 ATACCTGCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCA 580534 Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 |||||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 580533 TTGAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 580475 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 ||||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 580474 TACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 580415 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 ||| | | || | |||||||| | | |||||||| || ||||| |||| ||| Sbjct 580414 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATAGT 580355 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 | | ||||||| |||||| | | | ||||| ||| || Sbjct 580354 GGTGTAGAAATCAATGCCTTCGTAGAGACTATCAATTTCTAT 580313 >seq99 Length=156952 Score = 159 bits (176), Expect = 3e-33 Identities = 348/513 (68%), Gaps = 20/513 (4%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| || |||| | ||||||||||||||||| | || |||||||| || ||| Sbjct 105752 GGTTCATTGATGATTCGAACTACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 105693 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||||| |||||| ||||| |||||||| || | ||||||| | | |||||||| Sbjct 105692 TGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTTG 105633 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 105632 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 105573 Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 |||| | ||| ||| |||| | | | | || || | ||||| | Sbjct 105572 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTGAGTTGAACGTTCGGTTTGCT--TG 105518 Query 282605 ACATTAATA--ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662 | || || ||| |||| ||||| ||| ||| | ||||| ||| | ||| Sbjct 105517 ATTTTTCTAACACTGTAAACGGCCACATTTTACGATCCGCTTGAAGACTCTTGTCCGACC 105458 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCT 282721 | |||| ||||| | || || ||||| || | ||||| ||||| | || | Sbjct 105457 ATTCTCGACCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC- 105399 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGAT 282778 |||| ||| || | ||| || |||||| | | || | |||||| | ||||| || Sbjct 105398 TGATTTTTCGCGGAATCGCCGATCAGACGCTCACCTTCCGGTGTAAAAGCCACATACGAC 105339 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838 || || | ||||| || |||||||| |||||||||||||| |||||| | | || Sbjct 105338 GGGGTAATACGATTGCCCTGATCATTGGCAATAATTTCAACACGACCATTCTTGAAAACT 105279 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 || || ||||||| || || ||| |||||| Sbjct 105278 CCAAC---ACTAAAAATTATT--TAATTCAATA 105251 >seq117 Length=133494 Score = 107 bits (118), Expect = 1e-17 Identities = 125/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | |||||||| Sbjct 58645 TATATTTGTGGTACAGATGAATATGGCACTGCCACAGAGACAAAAGCTATTGAGGAAGGT 58704 Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736 || ||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 58705 GTGACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 58764 Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACAG 607784 |||||||| |||||||| ||||||| | | | |||||| ||||| Sbjct 58765 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAGAACAG 58809 >seq53 Length=248793 Score = 93.3 bits (102), Expect = 3e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 164595 TACAGGACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCA 164654 |||| ||| |||||||||||| | ||||||| | |||| || ||||| || || || | | Sbjct 132030 TACAAGACGGTTTGGGAAATTTCCCAAAAATGCGTCATAGACATGGCTGCCGAAAGGGGA 131971 Query 164655 CCTTTTGTTGATCAAACACAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGA 164714 ||||| |||| ||| | ||| ||||| | |||||| | | || | | ||| | | Sbjct 131970 GCTTTTATTGACCAATCCCAGTCGTTGAATATTCACATTGCTGAGCCCAACTATGCTAAA 131911 Query 164715 TTAAATTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTG 164774 || | || | || || | |||| || |||||| ||||| || ||||| |||||| Sbjct 131910 TTGACGTCGATGCATTTCTACGGCTGGAAGAGAGGTCTGAAAACTGGGATGTACTATTTG 131851 Query 164775 AGATCTAAACCAGC 164788 ||| | || || || Sbjct 131850 AGAACCAAGCCGGC 131837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740098250905614