Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq104 100 3e-16 seq389 89.7 5e-13 seq51 89.7 5e-13 seq41 87.8 2e-12 seq53 86.0 6e-12 >seq104 Length=152162 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||||||| |||||||||| ||||||||||| || || || ||||| || |||||| Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||||| | ||| | ||||||| |||||| ||||| | ||| | || || || || Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| || ||||| ||||| Sbjct 5089 AGAGTTTTCACAAATATCTGCAT 5111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||||||| | |||| |||||||||||| || || || |||||||| || |||||| Sbjct 4001 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 4060 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 ||||| | || | ||||| | |||||| ||||| | ||| | || |||||||| | Sbjct 4061 CTTTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGA 4120 Query 137390 ATGTTTTTACGAATATTTGCAT 137411 || || ||||| |||||||| Sbjct 4121 GGGTCTTAACGAAAATTTGCAT 4142 >seq389 Length=4972 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||||||| | |||| |||||||||||| || || || |||||||| || ||||| Sbjct 4192 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 4251 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 ||||| | ||| | ||||||| ||||| ||||| | ||| | || ||||| || | Sbjct 4252 CTTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 4311 Query 137390 ATGTTTTTACGAATATTTGCAT 137411 || || ||||| |||||||| Sbjct 4312 GGGTCTTAACGAAAATTTGCAT 4333 >seq51 Length=255661 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||||||| | |||| |||||||||||| || || || |||||||| || ||||| Sbjct 781 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 722 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 ||||| | ||| | ||||||| ||||| ||||| | ||| | || ||||| || | Sbjct 721 CTTTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGA 662 Query 137390 ATGTTTTTACGAATATTTGCAT 137411 || || ||||| |||||||| Sbjct 661 GGGTCTTAACGAAAATTTGCAT 640 >seq41 Length=297594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 ||||||| | || | |||||||||||| ||||| | |||||||| ||| |||| Sbjct 63634 TCAACGCAATTGAAACAATTCCGTGTGTGAAGAAAAAAGCAGATTGGGCTTTGCGTTGGA 63575 Query 50257 C---TaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAG 50313 | | | || || | || |||||||||| || ||||| || ||||||| Sbjct 63574 TCGGTGACCGCCAATCAC---CGTTTTCCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAG 63518 Query 50314 GTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGC 50373 || | || |||||||| ||||| || | || || | | |||| |||| | |||| Sbjct 63517 GTATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGC 63458 Query 50374 CCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGA 50413 |||| | || || |||||||||||||| || || ||||| Sbjct 63457 CCGGTTTGACCTTCAGCAACGAGTTGATCTCTCGTGACGA 63418 >seq53 Length=248793 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 150410 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 150469 ||||||||||| || ||||| || || | |||||| ||||| | |||| ||||| || | Sbjct 131852 AAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAAT 131911 Query 150470 TTAGGCAAAGTAGGG-TTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGC 150528 ||| ||| ||| ||| | || |||| | || ||||| || ||| || ||||| || Sbjct 131912 TTA-GCATAGTTGGGCTCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGC 131970 Query 150529 TCCCCTGTCTGCTGCCATTTCAAT 150552 |||||| || || ||||| || || Sbjct 131971 TCCCCTTTCGGCAGCCATGTCTAT 131994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488477808394800