Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq90 89.7 9e-13 >seq90 Length=164044 Score = 89.7 bits (98), Expect = 9e-13 Identities = 191/283 (67%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 143020 TAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAG 143079 || |||| || ||||||| ||| |||| | || ||||| || |||||| || | | Sbjct 87112 TACAACTAAGACGATGGGCAGATATTTTGGTGATTGCGCCATTGGACGCAAATTCGATGG 87053 Query 143080 CAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 143139 | ||||| |||| || || || ||||||||| ||||| | | || ||||| |||||| Sbjct 87052 CGAAAATTTCCAATGGAATTTGTGATAATTTATTAACAAGTGTGGTTAGAGCTTGGGATT 86993 Query 143140 TAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTA 143199 || || | | | |||||||| ||||||| | ||||||||||| || || | Sbjct 86992 GTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATGTGGGAACACCCGATAA 86933 Query 143200 CAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCATAGAAATAGAATGCATAG 143256 | | | || || | | ||| |||| | | || |||| |||| | ||||| | Sbjct 86932 CGTATGACCAGATGGACAAGCTGAAAAATTTGTTTGGATTCAAAGAAGTTCCTTGCATCG 86873 Query 143257 aaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299 | || || || ||||| ||| || ||||||||||||| Sbjct 86872 AGAAGGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 86830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903288799075040