Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq53 84.2 5e-11 >seq53 Length=248793 Score = 84.2 bits (92), Expect = 5e-11 Identities = 170/249 (68%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| | ||||| | ||| | ||||||||||| |||| |||||||| || Sbjct 133518 AGAGACCTGGGGCGTTTGCGGTTTATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 133459 Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860 | || || |||| | || || | |||||| | ||||| | ||||| |||||||| Sbjct 133458 TTGA--CGCGAAAAAGAACACGGGCATCGAAGAAAACAGAGCCAGAGATTTGTTTTATGC 133401 Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920 | ||||| | ||| |||||||||| || || ||| | || ||||| || || Sbjct 133400 CCTTTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 133341 Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 ||| |||||| | ||| || | | ||| | | || | ||||||||| | | || Sbjct 133340 GTGCCCTCATGAATGTCCAGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 133281 Query 110981 CGAAAAATA 110989 |||||| || Sbjct 133280 CGAAAAGTA 133272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186647981743279