Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq389 86.0 4e-12 seq51 86.0 4e-12 seq104 82.4 5e-11 >seq389 Length=4972 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || |||||||||||||| ||||||||| | || | || ||||| || |||||| Sbjct 4474 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 4533 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| |||| || | |||||| || |||||| || | ||||| ||||| || || Sbjct 4534 CCTTTC-ACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 4592 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | |||||| || || |||||||| Sbjct 4593 AAGCGTTTTAACGAAAATCTGCAT 4616 >seq51 Length=255661 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || |||||||||||||| ||||||||| | || | || ||||| || |||||| Sbjct 499 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 440 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| |||| || | |||||| || |||||| || | ||||| ||||| || || Sbjct 439 CCTTTC-ACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 381 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | |||||| || || |||||||| Sbjct 380 AAGCGTTTTAACGAAAATCTGCAT 357 >seq104 Length=152162 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || ||||| || || ||||||||||| || ||||| |||||||| Sbjct 4772 CCACCACGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 4831 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAAT 33620 | || ||| | || ||||||||||| || | ||| || Sbjct 4832 AAAGTACGTCCATCTTCCAATTGTTTGCCTGAAAACAT 4869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328660578098880