Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq53 82.4 7e-11 >seq53 Length=248793 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 146899 ACTTGAAACTCGCCCGCCAGCACACGTCTGAG-ATACACATTGCTAGTGAAAGGCTCAAA 146957 |||||||| || |||| |||||||| | ||| ||| ||||| ||| | | || | Sbjct 132231 ACTTGAAATTCTCCCGATAGCACACGAC-GAGTATAGACATTCGACGTGTACGCTTCTAC 132289 Query 146958 AGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAA 147017 || ||||| ||||| || ||||| || || | ||| || ||||| |||| |||||| Sbjct 132290 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 132349 Query 147018 TGAATTTCGCAGACCGTAC 147036 |||||||||||||| ||| Sbjct 132350 CGAATTTCGCAGACCATAC 132368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476546625140040