Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq53 113 6e-20 >seq53 Length=248793 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| || || || | | ||||||||| || |||||||||||| |||| |||||||| Sbjct 131836 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAA 131895 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 |||||| || | ||| | ||| | || || || || |||||||||| ||| || Sbjct 131896 ATGCATCGACGTCAATTTAGCATAGTTGGGCTCAGCAATGTGAATATTCAACGACTGGGA 131955 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 ||| || || |||||||| || || || ||||| | ||| | | ||||| | |||||| Sbjct 131956 TTGGTCAATAAAAGCTCCCCTTTCGGCAGCCATGTCTATGACGCATTTTTGGGAAATTTC 132015 Query 68574 CCAAATAGTCTT 68585 ||||| ||||| Sbjct 132016 CCAAACCGTCTT 132027 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||||| | || ||||| || || || |||||| ||||| ||||||||||||||||| Sbjct 133027 ATATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 133086 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 |||| | || || || || ||||| | |||||||| || || |||||||| ||||| Sbjct 133087 CGACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCGGTTTCAATTTGAGA 133146 Query 69435 TTCGATAAT 69443 || || || Sbjct 133147 CTCAATTAT 133155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686815732443960