Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq308 96.9 3e-15 seq53 91.5 1e-13 seq104 87.8 2e-12 seq41 84.2 2e-11 >seq308 Length=9352 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || ||||||||||||||||||| || || | ||||||||||| || || Sbjct 1167 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATCCCCTCTTTATCCTGAATTTTA 1226 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||| | |||| | | ||||| || ||| ||||| ||||| || | ||| || || Sbjct 1227 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 1286 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||||||||| || ||||| Sbjct 1287 AGAGTTTTCACAAATATCTGCAT 1309 >seq53 Length=248793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCG 131611 || |||||||| || ||||||| | | ||| || || |||| |||||||| Sbjct 133272 TACTTTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCA 133331 Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671 || ||||| || ||||| | |||| ||||| |||||||| || | ||| || Sbjct 133332 TGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGT 133391 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttC 131731 | ||| | || || |||| |||||| ||| | || ||||| | ||| | | |||||| Sbjct 133392 ATCCAAAGGGCATAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCCGTGTTCTTTTTC 133451 Query 131732 AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | | ||| || || ||||| || ||||| ||||||||||| || || Sbjct 133452 GCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGC 133501 >seq104 Length=152162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || | || |||||||| ||||| || || | ||||||||||| || || Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||| | |||| | ||||||| || ||| ||||| ||||| || | ||| || || Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||||||||| || ||||| Sbjct 5089 AGAGTTTTCACAAATATCTGCAT 5111 >seq41 Length=297594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316 ||| ||| |||||||||||| ||||||||||||| ||||| ||||| ||||| ||||| | Sbjct 62983 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCAAGCGAGATCATCT 63042 Query 108317 TCATAAAATGAAAGGGATT 108335 |||||| | || ||||| Sbjct 63043 CCATAAAGTCGAACGGATT 63061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424878266032968