Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 351 3e-91 seq99 170 6e-37 seq104 154 4e-32 seq308 134 4e-26 seq7731 132 1e-25 seq389 123 8e-23 seq51 123 8e-23 seq271 118 3e-21 seq6644 114 4e-20 seq3104 111 5e-19 seq1633 111 5e-19 seq6638 109 2e-18 seq4475 98.7 3e-15 seq74 98.7 3e-15 seq126 96.9 1e-14 seq53 91.5 4e-13 >seq3 Length=883620 Score = 351 bits (388), Expect = 3e-91 Identities = 560/803 (70%), Gaps = 3/803 (0%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||||| |||||||| || |||||||| || | || ||| | Sbjct 579424 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 579483 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| |||||||| |||||||| || | || |||||| || ||||| || ||| Sbjct 579484 GTTGAAATTATTGCAAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 579543 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || ||||||| ||| | ||||| ||||| | ||| ||||| | ||| Sbjct 579544 GATACCGAACGACTGATTGGCGATGCGGCAAAGAATCAGGTTGCGTTGAATCCTCATAAT 579603 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| ||||||||||| ||| | | ||| ||| || || ||| Sbjct 579604 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATTTGATGATGCTGCTGTGCAGTCT 579663 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | ||||||| || |||| ||| | || || || ||||| | ||| | Sbjct 579664 GACATGAAACATTGGCCATTTAAAGTTATC---AATGATGGAACGAAACCTAAAATTCAA 579720 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || ||||| ||||| || || |||| ||| |||||||| | ||||| ||| Sbjct 579721 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCGGAAGAAATCAGCGCTATGGTGTTA 579780 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||||| ||| ||||| ||||| || |||| || | || || || ||| Sbjct 579781 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAATT 579840 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || || |||||||| ||| | |||||| || || ||||| ||||| | ||| Sbjct 579841 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 579900 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || || |||||| | |||| || || ||||| || || || |||||||| ||||| Sbjct 579901 TCTGGTTTGAATGTTTTGCGAATTATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 579960 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||||| || | ||| | ||| |||| |||| || ||||| | ||||||||||| Sbjct 579961 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACG 580020 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 |||||||| || | | || | || || || |||||||| || || | || |||||| Sbjct 580021 TTTGATGTGTCTATTTTGACCATCGAGGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 580080 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || ||||| | || ||||| || || Sbjct 580081 GACACTCACTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTAGCTGAG 580140 Query 349919 TTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGA 349978 |||||||| | || | || || | |||||| | ||| |||||||| | | Sbjct 580141 TTTAAGCGAAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCGC 580200 Query 349979 ACTGCGTGTGAACGTGCTAAGCG 350001 || || |||||||| || || || Sbjct 580201 ACAGCTTGTGAACGAGCGAAACG 580223 Score = 100 bits (110), Expect = 9e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 183561 AATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCT 183620 || || | ||| ||||||||||| ||||| | | ||||| |||| | ||||||| | Sbjct 580229 AACGTGCGTTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 580170 Query 183621 GTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTA 183680 | || || | || | |||| ||||| |||| | ||||| | | | | | Sbjct 580169 GACATGTCCTTCTTGTTCTTTCGCTTAAACTCAGCTACGAAATGATTTACCATGCGATTG 580110 Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 || || || |||||||| || || || || ||||| |||| || || ||||| || || Sbjct 580109 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 580050 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || || || | ||||| || |||||||| ||||||||||| | ||||| Sbjct 580049 TCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGTCAAA 580000 >seq99 Length=156952 Score = 170 bits (188), Expect = 6e-37 Identities = 332/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292 |||||| |||| | |||| |||||| ||||| ||||| |||||||| || || | | Sbjct 105272 GTGTTGGAGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGTA 105331 Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349 || || || || || || ||||| ||| ||||||| |||| || ||||| || | Sbjct 105332 TTACCCCGTCGTATGTGGCTTTTACACCGGAAGGTGAGCGTCTGATCGGCGATTCCGCGA 105391 Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 ||||||| | || | | ||||| | |||||||| || ||||||||||| | ||||| Sbjct 105392 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGT 105450 Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468 || | || ||||| | ||| | |||| ||| | || ||||| || ||| Sbjct 105451 CGAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCGTTTACAGT-GTT 105509 Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528 |||| | | |||| | || | | ||| |||||| | ||| || Sbjct 105510 AGAAAAATCAAGCA--AACCGAACGTTCAACTCACTGTTAACGGTGAAAAGAAATTGTTC 105567 Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||||||||||| | |||||||| | |||||||| |||||||| ||||| ||| Sbjct 105568 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTAT 105627 Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 || || || ||| | |||| || | || || || || ||||| || ||||| || Sbjct 105628 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAA 105687 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 ||| || || |||||||| |||| |||||| || | ||||| | |||| || ||| Sbjct 105688 CGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTAGTTCGAATCATCAAT 105747 Query 349709 GAACC 349713 ||||| Sbjct 105748 GAACC 105752 Score = 129 bits (142), Expect = 2e-24 Identities = 410/630 (65%), Gaps = 18/630 (3%) Strand=Plus/Plus Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 ||||| || | || |||||| || || ||||| ||||| ||||| || || || Sbjct 106418 GAAGTTGTACTGGTCGGTGGTAGCACTCGCATTCCCAAAGTGCAACAATTGCTGAAGGAA 106477 Query 350243 TTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGT 350302 ||||| || || ||||| || | | |||||||| || ||||||||||| || ||| Sbjct 106478 TTTTTCAACGGAAAAGAGCCCAGTCGTGGTATTAATCCTGACGAAGCTGTTGCCTACGGT 106537 Query 350303 GCTGCTGTTCAGGCATCTATTTTATCTGGA-AATAAGAGTTCTAAAATTGATGATCTATT 350361 ||||| || || || | | ||||| || |||| | || |||||| | Sbjct 106538 GCTGCGGTACAAGCTGGCGTAATTTCTGGTGAAGAAGAT-------ACTGGTGATCTTGT 106590 Query 350362 ACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGT 350421 || | ||||| | ||| | | | ||| | |||||| ||| | ||| ||||| Sbjct 106591 GCTGTTGGATGTCAATCCGTTGACTTTGGGAATTGAAACTGTTGGCGGAGTGATGACGAA 106650 Query 350422 TCTTATTCCTAGAAATA--GTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTT 350479 || ||||| || |||| ||| || || || || || || || | || || | Sbjct 106651 ACTGATTCCCAGGAATACGGTAGTG--CCGACCAAGAAATCGCAGATATTCAGCACCGCT 106708 Query 350480 GCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAA 350539 || || |||||||| |||| || |||||||| || ||||| ||||| | || ||| Sbjct 106709 GCCGACAATCAGCCCACGGTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACAAAA 106768 Query 350540 GATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTT 350599 || ||| | ||||| | || || | || || || || ||| | || || Sbjct 106769 GACAATCACCTTCTTGGCAAGTTCGATCTTACTGGCATACCTCCGGCTCCTCGCGGTGTG 106828 Query 350600 CCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTT 350659 || || ||||||||| | |||||||||||| ||||| ||||| | || ||||| | Sbjct 106829 CCACAAATTGAAGTCACATTCGATATTGATGTGAATGGCATTTTGCACGTCACCGCCGAA 106888 Query 350660 GAAAAATCAAGTGGTAAAAGTAGTAAGGTAGAAATTACTAATGATAAATCTAGACTTTCA 350719 || ||| | || || | | ||| | |||||| ||||| | | || ||| Sbjct 106889 GACAAAGGCACCGGAAACAAGAACAAGATCACAATTACCAATGACCACAACCGTCTGTCA 106948 Query 350720 AAAGAAGATATTGAGAAAATGACACAAGATGCCGAATCATATGCTAAGGAAGATG--AAG 350777 ||||||||||| |||| | |||||||| |||||| |||||| | ||| Sbjct 106949 CCGGAAGATATTGACCGCATGATCAACGATGCCGAGAAATATGC---GGAAGAGGACAAG 107005 Query 350778 AA-TTTAGAGAGCGTGTTAATTCTAAAAAT 350806 || || | ||| ||||| || | |||||| Sbjct 107006 AAGTTGAAAGAACGTGTGGATGCGAAAAAT 107035 Score = 86.0 bits (94), Expect = 2e-11 Identities = 299/465 (64%), Gaps = 14/465 (3%) Strand=Plus/Minus Query 182925 AAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATT 182984 ||||| ||||| |||| ||| |||| |||||||| ||||| ||||| || || Sbjct 106872 AAAATGCCATTCACATCAATATCGAATGTGACTTCAATTTGTGGCACACCGCGAGGAGCC 106813 Query 182985 GGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTC 183044 || || || ||||| | | || | || | | ||| ||||| || ||| || Sbjct 106812 GGAGGTATGCCAGTAAGATCGAACTTGCCAAGAAGGTGATTGTCTTTTGTCATTGGTCGT 106753 Query 183045 TCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACT 183104 |||||||| | |||||||||||||| | |||||||| || | || || | Sbjct 106752 TCGCCTTCGAAAACTTGAATAGTAACCGTGGGCTGATTGTCGGCAGCGGTGCTGAATATC 106693 Query 183105 TGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAA-CAATTACAGTCATTACTTCTCT 183163 ||| ||| || | || | | ||| | |||| || || | ||||| ||| | | Sbjct 106692 TGCGATTTCTTGGTCGGCACTACCGTATTCCTGGGAATCAGTTTC-GTCATCACTCCGCC 106634 Query 183164 GGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTT 183223 ||||||| | ||| || | || || ||||| | | | | ||| || | Sbjct 106633 AACAGTTTCAATTCCCAAAGTCAACGGATTGACATCCAACAGCACAAGATCACCAGTATC 106574 Query 183224 ATCTGATTTAATATCACTTAAAATTGC---AGCTTGAACAGCTGCACCATATGCAACAGC 183280 ||| |||| ||||| | |||||| || || ||||| || |||||||| Sbjct 106573 TTCT---------TCACCAGAAATTACGCCAGCTTGTACCGCAGCACCGTAGGCAACAGC 106523 Query 183281 TTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTG 183340 ||| || || ||||| |||| ||||| || || |||||||| |||| ||| Sbjct 106522 TTCGTCAGGATTAATACCACGACTGGGCTCTTTTCCGTTGAAAAATTCCTTCAGCAATTG 106463 Query 183341 TTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTC 183385 ||| | ||| ||||| | ||| ||||||||| | ||| ||||| Sbjct 106462 TTGCACTTTGGGAATGCGAGTGCTACCACCGACCAGTACAACTTC 106418 >seq104 Length=152162 Score = 154 bits (170), Expect = 4e-32 Identities = 120/143 (84%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 20325 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTA 20384 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 20385 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20444 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 20445 AATGTTTTCACAAAAATCTGCAT 20467 Score = 154 bits (170), Expect = 4e-32 Identities = 120/143 (84%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 20612 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20671 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 20672 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 20731 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 20732 AATGTTTTCACAAAAATCTGCAT 20754 Score = 154 bits (170), Expect = 4e-32 Identities = 120/143 (84%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 20899 TTACCAGCAAATATCAATCGTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGAATTTTA 20958 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 20959 CCCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 21018 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 21019 AATGTTTTCACAAAAATCTGCAT 21041 Score = 149 bits (164), Expect = 2e-30 Identities = 126/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 140584 CTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTAT 140643 || || ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||| Sbjct 4958 CTGCAGGTTACTTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTAT 5017 Query 140644 CCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTG 140703 ||||||||||| |||||||||| ||||| | || || ||||| ||||| || |||| | Sbjct 5018 CCTGAATTTTACCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGG 5077 Query 140704 TCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || ||||| ||||| ||||||||| Sbjct 5078 TTTTCCCAGTGAGAGTTTTCACAAATATCTGCATT 5112 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 21331 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 21390 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| ||||| | || |||||||||||||| ||||| | || ||||| || Sbjct 21391 CTTTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 21450 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 21451 AGAGTCTTCACGAATATCTGCAT 21473 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 3718 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTCCCT 3777 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 3778 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 3837 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || |||||||| ||||| Sbjct 3838 GTCTTAACAAAAATTTGCAT 3857 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| ||||| || |||||||| || ||||| ||| | Sbjct 4631 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 4690 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||||| || ||||| | ||| ||||| |||||||||||||||| || ||||| || | Sbjct 4691 TTTACGTTCTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 4750 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || ||||| |||||||| Sbjct 4751 GTCTTCACAAATATCTGCAT 4770 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||||||||| |||||||| || Sbjct 4003 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 4062 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | || || ||||| ||||| | || | || || ||||| || Sbjct 4063 TTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGAGG 4122 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 4123 GTCTTAACGAAAATTTGCATT 4143 >seq308 Length=9352 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| || ||||| || ||||| || ||||| || |||||||||||||||||| Sbjct 1167 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATCCCCTCTTTATCCTGAATTTTA 1226 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| ||||| || || || ||||| ||||| || |||| || || || || Sbjct 1227 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 1286 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 1287 AGAGTTTTCACAAATATCTGCATT 1310 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 8992 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 9051 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 9052 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 9111 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||| ||||| Sbjct 9112 GTCTTAACGAAAATTTGCAT 9131 >seq7731 Length=250 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| ||||| |||||||| || || ||||| || || Sbjct 18 CATACCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTC 77 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || |||||||| || || || || || |||||||| || | ||||| || || Sbjct 78 TGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGG 137 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || ||||| || || || ||||| | ||||| || Sbjct 138 TGGGATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTC 197 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || ||||| |||||||| Sbjct 198 CACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 248 >seq389 Length=4972 Score = 123 bits (136), Expect = 8e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||| || |||||||| |||||||| ||||||||| Sbjct 4474 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 4533 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| || || | || |||||||| ||||| | || | || || || || Sbjct 4534 CCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 4593 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || ||||||||||| Sbjct 4594 AGCGTTTTAACGAAAATCTGCAT 4616 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||| |||||||| |||||||| || Sbjct 3622 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 3681 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||||||||||| ||||| | || | || || || || || Sbjct 3682 TTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 3741 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 3742 GTCTTAACGAAAATTTGCATT 3762 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||||||||| || ||||| || Sbjct 4194 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 4253 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | || |||||||| ||||| | || | || || || || || Sbjct 4254 TTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 4313 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 4314 GTCTTAACGAAAATTTGCATT 4334 >seq51 Length=255661 Score = 123 bits (136), Expect = 8e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||| || |||||||| |||||||| ||||||||| Sbjct 499 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTA 440 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| || || | || |||||||| ||||| | || | || || || || Sbjct 439 CCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 380 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || ||||||||||| Sbjct 379 AGCGTTTTAACGAAAATCTGCAT 357 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||||||||| || ||||| || Sbjct 779 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 720 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | || |||||||| ||||| | || | || || || || || Sbjct 719 TTTACATTTTCTATTGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 660 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 659 GTCTTAACGAAAATTTGCATT 639 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||| |||||||| |||||||| || Sbjct 1351 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 1292 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||||||||||| ||||| | || | || || || || || Sbjct 1291 TTCACATTTTCTATTGTGTCAGATGGTTCGACTTCCAAAGTGATGGTTTTGCCAGTGAGG 1232 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 1231 GTCTTAACGAAAATTTGCATT 1211 >seq271 Length=23410 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 361 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 301 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 242 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||| ||||| Sbjct 241 GTCTTAACGAAAATTTGCAT 222 >seq6644 Length=275 Score = 114 bits (126), Expect = 4e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| Sbjct 100 TTACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 159 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || || || Sbjct 160 CCTTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 219 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| ||||| Sbjct 220 AGCGTCTTAACGAAAATTTGCAT 242 >seq3104 Length=412 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 205 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 264 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 265 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 324 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || || |||||| Sbjct 325 GTCTTAACGAATATTTGCATT 345 >seq1633 Length=565 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 361 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 302 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 301 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 242 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || || |||||| Sbjct 241 GTCTTAACGAATATTTGCATT 221 >seq6638 Length=275 Score = 109 bits (120), Expect = 2e-18 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| || | ||| |||||||| || ||||||||||||||||||||||||||| Sbjct 172 TTACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCCTGAATTTTA 231 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692 |||| ||| | ||||| | |||||||||||| ||||| Sbjct 232 CCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTC 269 >seq4475 Length=347 Score = 98.7 bits (108), Expect = 3e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 92 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTTCCT 33 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||| || || | |||||||||||| || Sbjct 32 TTTACATTCTCTATTGTATCAGATGGTTCCAC 1 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || |||||||| ||||||||||| ||||| |||||||||| || || | |||||||||| Sbjct 347 GGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGATGGT 288 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || | || || || || || || || || ||||| ||||| Sbjct 287 TCCACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTCTTAACGAAAATTTGCAT 235 >seq74 Length=189204 Score = 98.7 bits (108), Expect = 3e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || || |||||||||||||| ||||| | ||| | |||||| ||||| ||||| Sbjct 117082 CCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTGAATTGTATCAGAAGGTTCTACTTCC 117141 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | |||||||| ||||||||||| ||||| || ||||| Sbjct 117142 AAAGTGATAGTCTTTCCTGTTAGTGTTTTCACAAATATTTGCAT 117185 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| |||||||| ||||| | || || || ||||||||||| |||||||||||||| | Sbjct 116947 CTTTCTGAATATTGTAATCGGCCAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 117006 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | | ||||| |||||||| ||||| ||| Sbjct 117007 TCAATCGTTGTTGATCAGGTGGAATCCCT 117035 >seq126 Length=125278 Score = 96.9 bits (106), Expect = 1e-14 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 266916 AATGGAGATGGTTATAATTTTGCAAAAGTTCGTCTAAGAACATTACGCCAACCAGTA-AT 266974 |||| ||| || | || |||| ||||| ||| | | | ||||| | || | | || Sbjct 103843 AATGCAGACGGCAACAAGTTTGTCAAAGTGCGTGTGCGTTCGATACGC-ATCCCGCAGAT 103901 Query 266975 CGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCTGA 267034 |||||||||||| | ||||| ||||| || || || || ||||| | | | || | | Sbjct 103902 TGGCGATAAATTTGCCAGTCGTCACGGTCAGAAGGGCACTATTGGGATGGTATATCGTCA 103961 Query 267035 AGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGC 267094 ||| | |||||||| | || || || | || |||||||| || ||||| || || Sbjct 103962 AGAGGACATGCCATTCACGTGCGAAGGCATCACGCCGGATATTATAATCAATCCACACGC 104021 Query 267095 TATTCCTAGTCGTATGACAATTGGTCAATT 267124 ||||||||||| ||||| |||||||| || Sbjct 104022 AATTCCTAGTCGAATGACCATTGGTCATTT 104051 >seq53 Length=248793 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206563 AATCCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATT 206622 || || || || || || | ||| || ||| | ||||||||||||||||| | || || Sbjct 133777 AAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTTAATGTGTCGTATATG 133836 Query 206623 CCATCAACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGC 206682 || || | || || || ||| | || | ||||||| || |||||||||| Sbjct 133837 CCTTCGATGCTGTCTGATTTCATCGTGATCAGAAAACAACTGCTCAATTGTGGTCTGCAT 133896 Query 206683 GTTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACATTAAATTA 206742 || || ||||| || | ||||| | ||| ||||| || |||||| ||||| |||||| Sbjct 133897 GTACCGGCATTGAACAGCGTAGGTGAAGCGTGTGTGAACCATTTTTCTGACATCAAATTA 133956 Query 206743 TAAGT 206747 ||||| Sbjct 133957 TAAGT 133961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515043969518717