Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq53 86.0 7e-12 >seq53 Length=248793 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || || || ||||| ||||||| ||||| | ||||| | Sbjct 131846 GTTCTCAAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGAC 131905 Query 78250 GACAGCTTGGCCAGACTCGGGTTC-TCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | || || | || | | ||| || | ||| || || | ||||||||| ||||| || Sbjct 131906 GTCAATTTAG-CATAGTTGGGCTCAGCAATGTGAATATTCAACGACTGGGATTGGTCAAT 131964 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 | || || | ||||| |||||||| ||||| | ||||| | ||| ||||| Sbjct 131965 AAAAGCTCCCCTTTCGGCAGCCATGTCTATGACGCATTTTTGGGAAATTTCCCA 132018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548450481746160