Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7731 203 4e-47 seq389 113 5e-20 seq51 113 5e-20 seq104 111 2e-19 seq6644 107 2e-18 seq308 104 3e-17 seq271 104 3e-17 seq3104 100 3e-16 seq1633 100 3e-16 seq41 93.3 5e-14 seq6638 86.0 7e-12 >seq7731 Length=250 Score = 203 bits (224), Expect = 4e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| ||||| || ||||| || || |||||||| ||| | Sbjct 248 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCT 189 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | |||||||| || |||||||||||||| || || ||||||||| Sbjct 188 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 129 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| |||||||||| |||||||| |||||||| ||| Sbjct 128 CAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAAT 69 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || ||| | |||||||| ||||| Sbjct 68 ATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTTCGTGGTGG 22 >seq389 Length=4972 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || ||||| || || ||| | || || || || Sbjct 4900 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 4841 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||||| ||||||||| || || ||||||||||| || || || Sbjct 4840 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 4781 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || ||||| ||||||||||||| Sbjct 4780 CAACGTCTCATTTTTGCTGGTA 4759 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || || ||| | || || || || Sbjct 3762 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 3703 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | |||| |||| | |||||||| || || ||||||||||| ||||| || Sbjct 3702 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3643 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||| | || |||||||||| Sbjct 3642 GCAACGTTTGATATTTGCTGGTA 3620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || |||||||| || || || || ||| | || || || || Sbjct 4616 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 4557 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| | ||||||||| || || ||||||||||| ||||| ||| Sbjct 4556 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 4497 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||| | ||||||||||||||| Sbjct 4496 CAACGTTTGATTTTTGCTGGTAAG 4473 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || |||||||| || || ||| | || || || || Sbjct 4046 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 3987 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || | |||||||| || || ||||||||||| ||||| || Sbjct 3986 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3927 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||| | || ||||| |||| |||| Sbjct 3926 ACAACGTTTGATATTTGCCGGTATGCAA 3899 >seq51 Length=255661 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || ||||| || || ||| | || || || || Sbjct 73 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 132 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||||| ||||||||| || || ||||||||||| || || || Sbjct 133 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 192 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || ||||| ||||||||||||| Sbjct 193 CAACGTCTCATTTTTGCTGGTA 214 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || || ||| | || || || || Sbjct 1211 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 1270 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | |||| |||| | |||||||| || || ||||||||||| ||||| || Sbjct 1271 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1330 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||| | || |||||||||| Sbjct 1331 GCAACGTTTGATATTTGCTGGTA 1353 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || |||||||| || || || || ||| | || || || || Sbjct 357 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 416 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| | ||||||||| || || ||||||||||| ||||| ||| Sbjct 417 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 476 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||| | ||||||||||||||| Sbjct 477 CAACGTTTGATTTTTGCTGGTAAG 500 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || |||||||| || || ||| | || || || || Sbjct 927 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 986 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || | |||||||| || || ||||||||||| ||||| || Sbjct 987 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1046 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||| | || ||||| |||| |||| Sbjct 1047 ACAACGTTTGATATTTGCCGGTATGCAA 1074 >seq104 Length=152162 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 5112 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 5053 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | || | |||||||||||| || ||||||||||| || || || Sbjct 5052 AGACACAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 4993 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 ||||||||| || |||||||||||| ||| Sbjct 4992 GCAGCGTCTGATCTTTGCTGGTAAGTAAC 4964 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||||||||| || || || || ||| | || || || || | Sbjct 3857 ATGCAAATTTTTGTTAAGACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 3798 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| ||| Sbjct 3797 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 3738 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || |||||||||| Sbjct 3737 CAGCGTTTGATATTTGCTGGTA 3716 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||| | || || || || ||||| ||||| |||||| || Sbjct 4770 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 4711 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||| ||||| ||||| || || || |||||||| || Sbjct 4710 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 4651 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || ||||||||||||| Sbjct 4650 CAGCGGCTTATTTTTGCTGGTA 4629 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || || || || | || || ||| || | Sbjct 20467 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 20408 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| |||||| ||||||||| || ||||| || |||||||| || ||| Sbjct 20407 GATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAG 20348 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || || | || ||||||||||| Sbjct 20347 CAACGATTGATATTTGCTGGTAA 20325 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || || || || | || || ||| || | Sbjct 20754 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 20695 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| |||||| ||||||||| || ||||| || |||||||| || ||| Sbjct 20694 GATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCAG 20635 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || || | || ||||||||||| Sbjct 20634 CAACGATTGATATTTGCTGGTAA 20612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || || || || | || || ||| || | Sbjct 21041 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 20982 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| |||||| ||||||||| || ||||| || |||||||| || ||| Sbjct 20981 GATACGATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCAG 20922 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || || | || ||||||||||| Sbjct 20921 CAACGATTGATATTTGCTGGTAA 20899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || ||||| ||||| || || ||||| || || || ||||| || Sbjct 21476 ATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 21417 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| |||| | || |||||||||||| ||||| || |||||||| || Sbjct 21416 TCAGACACCATTGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 21357 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | |||| ||||| ||||| Sbjct 21356 CAGCAAAGATTAATCTTTGCAGGTAA 21331 >seq6644 Length=275 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||||||||| || || || || ||| | || || || || | Sbjct 242 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 183 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| ||| Sbjct 182 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 123 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | |||||||| |||||| Sbjct 122 CAGCGTTTGATTTTTGCCGGTAAG 99 >seq308 Length=9352 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||||||||| || || || || ||| | || || || || | Sbjct 9131 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 9072 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| ||| Sbjct 9071 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 9012 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || |||||||||| Sbjct 9011 CAGCGTTTGATATTTGCTGGTA 8990 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 1310 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 1251 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || |||| |||| | || | |||||||||||| || ||||| ||||| || || || Sbjct 1250 AGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCCGATCA 1191 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||||| |||||||| |||||| || Sbjct 1190 ACAGCGTCTCATTTTTGCAGGTAAGTAA 1163 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || || ||| | || || || || Sbjct 338 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 279 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| | || | |||||||| || || ||||||||||| ||||| || Sbjct 278 CGACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 219 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||| | || ||||| ||||||||| Sbjct 218 ACAACGTTTGATATTTGCCGGTAAGCAA 191 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||| | || || || || ||||| || || |||||| | Sbjct 968 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 909 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||| ||||| ||||| || || || |||||||| || Sbjct 908 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 849 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || ||||||||||||| Sbjct 848 CAGCGGCTTATTTTTGCTGGTA 827 >seq271 Length=23410 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||||||||| || || || || ||| | || || || || | Sbjct 222 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 281 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| ||| Sbjct 282 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 341 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || |||||||||| Sbjct 342 CAGCGTTTGATATTTGCTGGTA 363 >seq3104 Length=412 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || || ||| | || || || || Sbjct 345 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 286 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| || Sbjct 285 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 226 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||| | |||||||| |||| Sbjct 225 GCAGCGTTTGATTTTTGCCGGTA 203 >seq1633 Length=565 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || || ||| | || || || || Sbjct 221 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 280 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| || Sbjct 281 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 340 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||| | |||||||| |||| Sbjct 341 GCAGCGTTTGATTTTTGCCGGTA 363 >seq41 Length=297594 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/141 (75%), Gaps = 11/141 (8%) Strand=Plus/Minus Query 64706 CGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCAT 64765 ||||||||| |||| |||||||| ||| |||| ||||||||||| || | Sbjct 63545 CGTTTGGTC-GCGT-TCGCAGCTGTTG---------AAGGTATTTTCTTTTCCGGCAGCT 63497 Query 64766 TCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACG 64825 || || ||||||||| | |||||||| ||||||||||| ||| || | || |||| Sbjct 63496 TCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACG 63437 Query 64826 AGCTGATCTCTCGGGACGAGG 64846 || |||||||||| ||||||| Sbjct 63436 AGTTGATCTCTCGTGACGAGG 63416 >seq6638 Length=275 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| || | |||| | |||||||||||| || || |||||||| ||||| || Sbjct 255 TGATACAATTGAAATTGTGAAAGGTAAAATTCAGGATAAAGAAGGAATTCCACCAGATCA 196 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||| | |||||||| |||||| Sbjct 195 GCAGCGTTTGATTTTTGCCGGTAAG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570233130069680