Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7731 84.2 1e-11 seq308 82.4 5e-11 seq271 82.4 5e-11 >seq7731 Length=250 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || || || || |||| || || ||| | || || || || || |||||||| Sbjct 57 CTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAA 116 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| ||||| || || | ||||||||||| |||| || | || ||| Sbjct 117 GATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATC-TTAGCCTTGACGT 175 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| ||||||||| || | ||| || || || || || | || || | Sbjct 176 TGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGA 235 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 236 CAAAGATCTGCAT 248 >seq308 Length=9352 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | |||||||||||| ||||| |||||||| |||||||||||||| Sbjct 9132 GCCACCCCGAAGACGAAGCACCAAATGGAGCGTGCTTTCCTTTTGGATGTTATAATCTGA 9191 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACC 34568 | |||| | ||||| | |||||| || Sbjct 9192 CAACGTTCTACCATCTTCCAATTGTTTTCC 9221 >seq271 Length=23410 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | |||||||||||| ||||| |||||||| |||||||||||||| Sbjct 221 GCCACCCCGAAGACGAAGCACCAAATGGAGCGTGCTTTCCTTTTGGATGTTATAATCTGA 162 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACC 34568 | |||| | ||||| | |||||| || Sbjct 161 CAACGTTCTACCATCTTCCAATTGTTTTCC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314688024121487