Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq308 123 2e-23 seq389 116 3e-21 seq51 116 3e-21 seq104 114 1e-20 seq3104 86.0 5e-12 seq1633 86.0 5e-12 >seq308 Length=9352 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| || || || | |||||||| ||||||||||| || Sbjct 1309 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 1250 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| |||||||| || ||||| || || |||||||||||| Sbjct 1249 GACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCCGATCAA 1190 Query 27108 CAGCGT 27113 |||||| Sbjct 1189 CAGCGT 1184 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | ||||||||||| ||| Sbjct 337 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 278 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 277 GACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 218 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136 || ||||| |||| ||||| || ||||| Sbjct 217 CAACGTTTGATATTTGCCGGTAAGCAATT 189 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| || || | ||||| || ||||| || ||||| Sbjct 968 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 909 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || |||||||||||||||||||| || || |||||| Sbjct 908 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 849 Query 27108 CAGCG 27112 ||||| Sbjct 848 CAGCG 844 >seq389 Length=4972 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || |||||||| | || ||| | ||||||||||| ||| Sbjct 4045 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATCC 3986 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 3985 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 3926 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136 || ||||| |||| ||||| | ||||| Sbjct 3925 CAACGTTTGATATTTGCCGGTATGCAATT 3897 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || || | || ||| | ||||||||||| || Sbjct 4617 CATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATC 4558 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 4557 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 4498 Query 27107 ACAGCGTTTAAT 27118 || ||||| || Sbjct 4497 GCAACGTTTGAT 4486 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || ||||| | || ||| | ||||||||||| || Sbjct 4901 CATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 4842 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || ||||||||||| ||||| || || ||||| ||||| Sbjct 4841 CGACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 4782 Query 27107 ACAGCGT 27113 ||| ||| Sbjct 4781 ACAACGT 4775 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | ||||| ||||| || Sbjct 3761 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCT 3702 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 3701 GACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 3642 Query 27108 CAGCGTTTAATAT 27120 || ||||| |||| Sbjct 3641 CAACGTTTGATAT 3629 >seq51 Length=255661 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || |||||||| | || ||| | ||||||||||| ||| Sbjct 928 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATCC 987 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 988 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAA 1047 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136 || ||||| |||| ||||| | ||||| Sbjct 1048 CAACGTTTGATATTTGCCGGTATGCAATT 1076 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || || | || ||| | ||||||||||| || Sbjct 356 CATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATC 415 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 416 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 475 Query 27107 ACAGCGTTTAAT 27118 || ||||| || Sbjct 476 GCAACGTTTGAT 487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || ||||| | || ||| | ||||||||||| || Sbjct 72 CATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 131 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || ||||||||||| ||||| || || ||||| ||||| Sbjct 132 CGACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 191 Query 27107 ACAGCGT 27113 ||| ||| Sbjct 192 ACAACGT 198 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | ||||| ||||| || Sbjct 1212 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCT 1271 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 1272 GACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 1331 Query 27108 CAGCGTTTAATAT 27120 || ||||| |||| Sbjct 1332 CAACGTTTGATAT 1344 >seq104 Length=152162 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| || || || | |||||||| ||||||||||| || Sbjct 5111 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 5052 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| |||||||| || ||||| || || ||||||||||| Sbjct 5051 GACACAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAG 4992 Query 27108 CAGCGT 27113 |||||| Sbjct 4991 CAGCGT 4986 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| || || | ||||| |||||||| || || || Sbjct 4770 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 4711 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || |||||||||||||||||||| || || |||||| Sbjct 4710 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 4651 Query 27108 CAGCG 27112 ||||| Sbjct 4650 CAGCG 4646 Score = 100 bits (110), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || |||||||| | || ||| | ||||| ||||| ||| Sbjct 4142 ATGCAAATTTTCGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTCGAACCCTCC 4083 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 4082 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 4023 Query 27108 CAGCGTTTAATAT 27120 || ||||| |||| Sbjct 4022 CAACGTTTGATAT 4010 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || ||||| || || || |||| || || ||||| ||||| || Sbjct 21473 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 21414 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||||| || || |||||||| || || ||||| Sbjct 21413 GACACCATTGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 21354 Query 27108 CAGCGTTTAAT 27118 || | ||||| Sbjct 21353 CAAAGATTAAT 21343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || || || | || ||| | ||||||||||| || Sbjct 3858 CATGCAAATTTTTGTTAAGACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATC 3799 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| || ||| ||||| || || ||||| || || ||||| ||||| Sbjct 3798 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 3739 Query 27107 ACAGCGTTTAATAT 27120 |||||||| |||| Sbjct 3738 GCAGCGTTTGATAT 3725 >seq3104 Length=412 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || || ||||| | || ||| | ||||||||||| || Sbjct 344 ATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCT 285 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||| || || ||||| || || ||||| ||||| Sbjct 284 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 225 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||||| || | ||||| Sbjct 224 CAGCGTTTGATTTTTGCCGG 205 >seq1633 Length=565 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || || ||||| | || ||| | ||||||||||| || Sbjct 222 ATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCT 281 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||| || || ||||| || || ||||| ||||| Sbjct 282 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 341 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||||| || | ||||| Sbjct 342 CAGCGTTTGATTTTTGCCGG 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434859473993280