Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq104 96.9 2e-15 seq308 91.5 1e-13 >seq104 Length=152162 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 27919 ATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAA 27978 || ||| | || ||||||||||| || | ||| | ||||||||||| ||||| || ||| Sbjct 4869 ATGTTTTCAGGCAAACAATTGGAAGATGGACGTACTTTGTCCGATTATAACATTCAGAAA 4810 Query 27979 GAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| | || |||||||||||||||||||| || Sbjct 4809 GAGAGCACGCTTCACTTGGTTTTGCGTTTGCGTGGTGG 4772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | ||||| ||||||||||| || ||||| || ||| Sbjct 20557 GGGAAACAACTGGAAGATGGTCGTACATTGTCTGATTACAACATTCAGAAAGAAAGTACT 20498 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 20497 TTGCATTTGGTGCTGCGTTTACGTGGCGG 20469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | ||||| ||||||||||| || ||||| || ||| Sbjct 20844 GGGAAACAACTGGAAGATGGTCGTACATTGTCTGATTACAACATTCAGAAAGAAAGTACT 20785 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 20784 TTGCATTTGGTGCTGCGTTTACGTGGCGG 20756 >seq308 Length=9352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| || | ||| | ||||||||||| ||||| || |||||| Sbjct 1064 TTTTCAGGCAAACAGTTGGAAGATGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 1005 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || |||||||||||||||||||| || Sbjct 1004 AGCACGCTTCACTTGGTTTTGCGTTTGCGTGGTGG 970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355815390465753