Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq308 109 4e-19 seq104 102 6e-17 seq389 96.9 2e-15 seq51 96.9 2e-15 >seq308 Length=9352 Score = 109 bits (120), Expect = 4e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | | Sbjct 338 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 279 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| ||||| |||||| || ||||| || | || |||||||| Sbjct 278 CGACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 219 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAA 23757 ||| ||||| ||||||||||| || ||| Sbjct 218 ACAACGTTTGATATTTGCCGGTAAGCAA 191 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| ||||| || ||||| || ||||| ||||| || || Sbjct 1312 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 1253 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| | |||||| ||||| |||||| || ||||| || | || || ||| Sbjct 1252 TCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCCGAT 1193 Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753 ||||||||| | || ||||| || || Sbjct 1192 CAACAGCGTCTCATTTTTGCAGGTAA 1167 >seq104 Length=152162 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || || | Sbjct 4143 AATGCAAATTTTCGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTCGAACCCTC 4084 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | ||||| |||||| || |||||||| | || |||||||| Sbjct 4083 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 4024 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 || ||||| |||||||| || Sbjct 4023 GCAACGTTTGATATTTGCTGG 4003 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| ||||| || ||||| || ||||| ||||| || || Sbjct 5114 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 5055 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| ||||| |||||| || ||||| || | || || ||| Sbjct 5054 TCAGACACAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 4995 Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753 || |||||| | || ||||| || || Sbjct 4994 CAGCAGCGTCTGATCTTTGCTGGTAA 4969 >seq389 Length=4972 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| |||||||| || ||||| |||||| | ||||| || | | Sbjct 4046 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 3987 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | ||||| |||||| || ||||| || | || |||||||| Sbjct 3986 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3927 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||| ||||| ||||||||||| Sbjct 3926 ACAACGTTTGATATTTGCCGG 3906 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | | Sbjct 4334 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 4275 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| ||||| ||||| || |||||||| | || |||||||| Sbjct 4274 AGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 4215 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 || ||||| |||||||| || Sbjct 4214 GCAACGTTTGATATTTGCTGG 4194 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | | Sbjct 3762 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 3703 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||| |||||| || ||||| || | || |||||||| Sbjct 3702 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3643 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 || ||||| |||||||| || Sbjct 3642 GCAACGTTTGATATTTGCTGG 3622 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || || ||||| |||||| | ||||| || | | Sbjct 4616 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 4557 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| |||||| || ||||| || | || |||||||| Sbjct 4556 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 4497 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || ||||| || ||||| || || Sbjct 4496 CAACGTTTGATTTTTGCTGGTAA 4474 >seq51 Length=255661 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | | Sbjct 639 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 698 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| ||||| ||||| || |||||||| | || |||||||| Sbjct 699 AGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 758 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 || ||||| |||||||| || Sbjct 759 GCAACGTTTGATATTTGCTGG 779 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| |||||||| || ||||| |||||| | ||||| || | | Sbjct 927 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 986 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | ||||| |||||| || ||||| || | || |||||||| Sbjct 987 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1046 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||| ||||| ||||||||||| Sbjct 1047 ACAACGTTTGATATTTGCCGG 1067 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | | Sbjct 1211 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 1270 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||| |||||| || ||||| || | || |||||||| Sbjct 1271 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1330 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 || ||||| |||||||| || Sbjct 1331 GCAACGTTTGATATTTGCTGG 1351 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || || ||||| |||||| | ||||| || | | Sbjct 357 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCC 416 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| |||||| || ||||| || | || |||||||| Sbjct 417 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 476 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || ||||| || ||||| || || Sbjct 477 CAACGTTTGATTTTTGCTGGTAA 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337964948826212