Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq41 111 1e-19 >seq41 Length=297594 Score = 111 bits (122), Expect = 1e-19 Identities = 233/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || || |||||||| | |||| |||||| | ||| || || | || || || Sbjct 63445 AAGGTCAAACCGGGCATCAGGCCTCGCTTTTTCAACCAGAAAATTGACGCGAAGCTGCCG 63504 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAA----TCGGGACCCGAACGAGCT 4714 |||||||| || ||||| || || || ||||| || || |||| | || || | Sbjct 63505 GAAAAGAAAATACCTTCAACAGCTGCGAACGCGACCAAACGTTCGGAAAACGGT-GAT-T 63562 Query 4715 GGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT 4774 ||| ||| ||||| || ||||| | ||||||||||| || ||||||||||| Sbjct 63563 GGCG--GTCACCGATCCAACGCAAAGCCCAATCTGCTTTTTTCTTCACACACGGAATTGT 63620 Query 4775 GTATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTAT 4831 | || ||||| || | | | || | | | || || | || || ||||| || Sbjct 63621 TTCAATTGCGTTGAACAGAAAATCACGCT---CCACCGGATCACGGATGTAGGTGTCAAT 63677 Query 4832 TAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCA 4891 | | ||| ||||| || ||||| | ||||||||||||||| || || || || ||| | Sbjct 63678 CAACAAGCTGTACATCTCGGAATGGACATTTTCTATAGCAATTTGGAAGCCATAGAAGAA 63737 Query 4892 TCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 | ||||| || ||||||| ||| | | |||||| ||| || Sbjct 63738 ACGTGCTTCGGTCACTTGAATTTCTTGAGAAAATCGTTCCAC 63779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426993186614387