Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq53 131 2e-25 >seq53 Length=248793 Score = 131 bits (144), Expect = 2e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| ||||| ||||| | ||| ||||||| || ||||||| |||||||||| ||| Sbjct 133289 TTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCACATCAGTGA 133348 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || || || | | || || ||||| || |||||||||||||| || ||| ||| Sbjct 133349 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGGGCATAAAA 133408 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 | ||||| || ||| | |||||| | || || |||||||| || ||||| || | Sbjct 133409 CAAATCTCTGGCTCTGTTTTCTTCGATGCCCGTGTTCTTTTTCGCGTCAAGAAAATCAAA 133468 Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130 || || | ||||| ||||| | ||| Sbjct 133469 TATGTCTGCGTGCCAAGGTTCCAAATA 133495 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861 ||| || || || | | ||||||||| |||||||| ||||| |||| |||||||| Sbjct 131836 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAA 131895 Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 |||||| |||| ||| | ||| | || || || || |||||||||| |||||| Sbjct 131896 ATGCATCGACGTCAATTTAGCATAGTTGGGCTCAGCAATGTGAATATTCAACGACTGGGA 131955 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 ||| || || |||||||| || || || ||||| | ||| | | ||||| | |||||| Sbjct 131956 TTGGTCAATAAAAGCTCCCCTTTCGGCAGCCATGTCTATGACGCATTTTTGGGAAATTTC 132015 Query 76982 CCAAATAGTTTTG 76994 ||||| || ||| Sbjct 132016 CCAAACCGTCTTG 132028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 || |||||||||||| || | || | |||||| || | ||| || || | ||| || Sbjct 132230 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 132289 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||||||||| ||||||||||| || || || ||||| ||||| ||||||| ||| || Sbjct 132290 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 132349 Query 77243 ACTATTTCTGAGACCAT 77259 ||||| ||||||| Sbjct 132350 CGAATTTCGCAGACCAT 132366 Score = 96.9 bits (106), Expect = 5e-15 Identities = 182/261 (70%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 ||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || | Sbjct 132447 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCTT 132506 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402 ||||||| ||| || | ||| || || || || || |||||| || | || || Sbjct 132507 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAG 132565 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459 || ||| || || | ||||| || ||||| ||||| |||||||| | |||| | | Sbjct 132566 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 132625 Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| || ||||| ||||| | | | ||| || ||||| || || || || || Sbjct 132626 TCTTCGGAT----TCAAATGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCAC 132681 Query 77519 TCCAATACCAATAGGTCTATG 77539 ||||||||||| |||| ||| Sbjct 132682 ACCAATACCAATTGGTCGATG 132702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694574681060960