Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq53 120 4e-22 >seq53 Length=248793 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 ||||| |||||| ||||| ||||| | ||| |||| || |||||||||| || ||| Sbjct 133281 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 133340 Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630 |||| |||||| || || || | | || || ||||| || |||||||||||||| || Sbjct 133341 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 133400 Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690 ||| ||| | ||||| || ||| |||||| | || || |||||||| || || Sbjct 133401 GCATAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCCGTGTTCTTTTTCGCGTCAAGA 133460 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || || | || || | ||||| ||||| | ||| | ||| Sbjct 133461 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGC 133501 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || |||| ||||| ||||| | | ||| || || || | | ||||||||| ||| Sbjct 131807 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 131866 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| ||||| |||| |||||||||||||| || | ||| | ||| | || Sbjct 131867 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 131926 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || || || |||||||||| |||||| ||| || || |||||||| || || || ||| Sbjct 131927 TCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCCCCTTTCGGCAGCC 131986 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589 || | ||| | | ||||| | ||||||||||| || ||| Sbjct 131987 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 132028 Score = 100 bits (110), Expect = 4e-16 Identities = 193/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938 ||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || | Sbjct 132447 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCTT 132506 Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 | ||||| ||| || | ||| || ||||| | || || || || | ||||| | Sbjct 132507 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGC 132566 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055 | ||||||||| | ||||| || ||||| ||||| |||||||| | |||| || Sbjct 132567 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 132626 Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115 |||| || | |||| ||||| | | | ||| || ||||| || | || || || | Sbjct 132627 CTTCG-GATT--CAAATGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCACAC 132683 Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 |||||||||| |||| ||| | || || || |||| || Sbjct 132684 CAATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGC 132723 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 |||||||||||| || | || | ||||| || | ||| || || | ||| || || Sbjct 132233 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 132292 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||| ||||||||||| || || || ||||||||||| ||||||| ||| || Sbjct 132293 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAACGA 132352 Query 75841 ATTTCTGAGACCAT 75854 ||||| ||||||| Sbjct 132353 ATTTCGCAGACCAT 132366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712837806300480